SOX transcription factors as important regulators of neuronal and glial differentiation during nervous system development and adult neurogenesis

M Stevanovic, D Drakulic, A Lazic… - Frontiers in molecular …, 2021 - frontiersin.org
The SOX proteins belong to the superfamily of transcription factors (TFs) that display
properties of both classical TFs and architectural components of chromatin. Since the …

High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell

S Chen, BB Lake, K Zhang - Nature biotechnology, 2019 - nature.com
Single-cell RNA sequencing can reveal the transcriptional state of cells, yet provides little
insight into the upstream regulatory landscape associated with open or accessible …

Proneural genes in neocortical development

G Wilkinson, D Dennis, C Schuurmans - Neuroscience, 2013 - Elsevier
Neurons, astrocytes and oligodendrocytes arise from CNS progenitor cells at defined times
and locations during development, with transcription factors serving as key determinants of …

[HTML][HTML] Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification

BS Clark, GL Stein-O'Brien, F Shiau, GH Cannon… - Neuron, 2019 - cell.com
Precise temporal control of gene expression in neuronal progenitors is necessary for correct
regulation of neurogenesis and cell fate specification. However, the cellular heterogeneity of …

Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

S Preissl, R Fang, H Huang, Y Zhao, R Raviram… - Nature …, 2018 - nature.com
Abstract Analysis of chromatin accessibility can reveal transcriptional regulatory sequences,
but heterogeneity of primary tissues poses a significant challenge in mapping the precise …

Efficient generation of astrocytes from human pluripotent stem cells in defined conditions

A Shaltouki, J Peng, Q Liu, MS Rao, X Zeng - Stem cells, 2013 - academic.oup.com
Astrocytes can be generated from various tissue sources including human pluripotent stem
cells (PSC). In this manuscript, we describe a chemically defined xeno-free medium culture …

mTOR signaling regulates the morphology and migration of outer radial glia in developing human cortex

MG Andrews, L Subramanian, AR Kriegstein - elife, 2020 - elifesciences.org
Outer radial glial (oRG) cells are a population of neural stem cells prevalent in the
developing human cortex that contribute to its cellular diversity and evolutionary expansion …

Efficient generation of CA3 neurons from human pluripotent stem cells enables modeling of hippocampal connectivity in vitro

A Sarkar, A Mei, ACM Paquola, S Stern, C Bardy… - Cell stem cell, 2018 - cell.com
Despite widespread interest in using human induced pluripotent stem cells (hiPSCs) in
neurological disease modeling, a suitable model system to study human neuronal …

Networks of neuronal genes affected by common and rare variants in autism spectrum disorders

E Ben-David, S Shifman - PLoS genetics, 2012 - journals.plos.org
Autism spectrum disorders (ASD) are neurodevelopmental disorders with phenotypic and
genetic heterogeneity. Recent studies have reported rare and de novo mutations in ASD, but …

Stage-specific transcription factors drive astrogliogenesis by remodeling gene regulatory landscapes

N Tiwari, A Pataskar, S Péron, S Thakurela, SK Sahu… - Cell Stem Cell, 2018 - cell.com
A broad molecular framework of how neural stem cells are specified toward astrocyte fate
during brain development has proven elusive. Here we perform comprehensive and …