Early developmental conditioning of later health and disease: physiology or pathophysiology?

MA Hanson, PD Gluckman - Physiological reviews, 2014 - journals.physiology.org
Extensive experimental animal studies and epidemiological observations have shown that
environmental influences during early development affect the risk of later pathophysiological …

Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease

H Ishiura, S Shibata, J Yoshimura, Y Suzuki, W Qu… - Nature …, 2019 - nature.com
Noncoding repeat expansions cause various neuromuscular diseases, including myotonic
dystrophies, fragile X tremor/ataxia syndrome, some spinocerebellar ataxias, amyotrophic …

Methodological aspects of whole-genome bisulfite sequencing analysis

S Adusumalli, MF Mohd Omar, R Soong… - Briefings in …, 2015 - academic.oup.com
The combination of DNA bisulfite treatment with high-throughput sequencing technologies
has enabled investigation of genome-wide DNA methylation beyond CpG sites and CpG …

Whole‐genome bisulfite sequencing analysis of circulating tumour DNA for the detection and molecular classification of cancer

Y Gao, H Zhao, K An, Z Liu, L Hai, R Li… - Clinical and …, 2022 - Wiley Online Library
Background Cancer cell–specific variation and circulating tumour DNA (ctDNA) methylation
are promising biomarkers for non‐invasive cancer detection and molecular classification …

Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation

J Park, DH Lee, S Ham, J Oh, JR Noh, YK Lee… - Nature …, 2022 - nature.com
DNA methylation is a crucial epigenetic modification in the establishment of cell-type-
specific characteristics. However, how DNA methylation is selectively reprogrammed at …

Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific …

H Liu, X Liu, S Zhang, J Lv, S Li, S Shang… - Nucleic acids …, 2016 - academic.oup.com
DNA methylation is a key epigenetic mark that is critical for gene regulation in multicellular
eukaryotes. Although various human cell types may have the same genome, these cells …

A survey of the approaches for identifying differential methylation using bisulfite sequencing data

A Shafi, C Mitrea, T Nguyen… - Briefings in …, 2018 - academic.oup.com
DNA methylation is an important epigenetic mechanism that plays a crucial role in cellular
regulatory systems. Recent advancements in sequencing technologies now enable us to …

DNA methylation in obesity and type 2 diabetes

VDF de Mello, L Pulkkinen, M Lalli… - Annals of …, 2014 - Taylor & Francis
To elucidate the mechanisms related to the development of type 2 diabetes (T2D) and other
degenerative diseases at a molecular level, a better understanding of the changes in the …

swDMR: a sliding window approach to identify differentially methylated regions based on whole genome bisulfite sequencing

Z Wang, X Li, Y Jiang, Q Shao, Q Liu, BY Chen… - PloS one, 2015 - journals.plos.org
DNA methylation is a widespread epigenetic modification that plays an essential role in
gene expression through transcriptional regulation and chromatin remodeling. The …

Methods for identifying differentially methylated regions for sequence-and array-based data

DP Chen, YC Lin, CSJ Fann - Briefings in functional genomics, 2016 - academic.oup.com
DNA methylation is one of the most important epigenetic mechanisms, and participates in
the pathogenic processes of many diseases. Differentially methylated regions (DMRs) in the …