Understanding sheath blight resistance in rice: the road behind and the road ahead

KA Molla, S Karmakar, J Molla, P Bajaj… - Plant biotechnology …, 2020 - Wiley Online Library
Rice sheath blight disease, caused by the basidiomycetous necrotroph Rhizoctonia solani,
became one of the major threats to the rice cultivation worldwide, especially after the …

Pan-genomics: Applications, challenges, and future prospects

D Barh, SC Soares, S Tiwari, VADC Azevedo - 2020 - books.google.com
Pan-genomics: Applications, Challenges, and Future Prospects covers current approaches,
challenges and future prospects of pan-genomics. The book discusses bioinformatics tools …

The unique sugar conversion and complex CAZyme system of Trichoderma brev T069 during solid-state fermentation of cassava peel

C Zhang, RM Lin, JM Hou, RAA Khan, XY Li… - Industrial Crops and …, 2023 - Elsevier
Cassava peel is a lignocellulose-based agricultural by-product that can be degraded into
reducing sugars as a raw material for energy. However, chemical and enzymatic treatment …

Synthesis and bioactivities of phenazine-1-carboxylic acid derivatives based on the modification of PCA carboxyl group

Z Xiong, J Niu, H Liu, Z Xu, J Li, Q Wu - Bioorganic & Medicinal Chemistry …, 2017 - Elsevier
Abstract Phenazine-1-carboxylic acid (PCA) as a natural product widely exists in microbial
metabolites of Pseudomonads and Streptomycetes and has been registered for the …

Pathogenicity Genes in Ustilaginoidea virens Revealed by a Predicted Protein–Protein Interaction Network

K Zhang, Y Li, T Li, ZG Li, T Hsiang… - Journal of Proteome …, 2017 - ACS Publications
Rice false smut, caused by Ustilaginoidea virens, produces significant losses in rice yield
and grain quality and has recently emerged as one of the most important rice diseases …

Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms

R Lin, L He, J He, P Qin, Y Wang, Q Deng… - DNA …, 2016 - academic.oup.com
MicroRNAs (miRNAs) are∼ 22 nucleotide non-coding RNAs that regulate gene expression
by targeting mRNAs for degradation or inhibiting protein translation. To investigate whether …

Computational network inference for bacterial interactomics

K James, J Muñoz-Muñoz - Msystems, 2022 - Am Soc Microbiol
Since the large-scale experimental characterization of protein–protein interactions (PPIs) is
not possible for all species, several computational PPI prediction methods have been …

Expanding interactome analyses beyond model eukaryotes

K James, A Wipat, SJ Cockell - Briefings in Functional Genomics, 2022 - academic.oup.com
Interactome analyses have traditionally been applied to yeast, human and other model
organisms due to the availability of protein–protein interaction data for these species …

[PDF][PDF] Systems understanding of plant-pathogen interactions through genome-wide protein-protein interaction networks

H Li, Z Zhang - Front. Agric. Sci. Eng, 2016 - zzdlab.com
Plants are frequently affected by pathogen infections. To effectively defend against such
infections, two major modes of innate immunity have evolved in plants; pathogen-associated …

[HTML][HTML] Large scale proteomic data and network-based systems biology approaches to explore the plant world

D Di Silvestre, A Bergamaschi, E Bellini, PL Mauri - Proteomes, 2018 - mdpi.com
The investigation of plant organisms by means of data-derived systems biology approaches
based on network modeling is mainly characterized by genomic data, while the potential of …