The plant microbiome: from ecology to reductionism and beyond

CR Fitzpatrick, I Salas-González… - Annual review of …, 2020 - annualreviews.org
Methodological advances over the past two decades have propelled plant microbiome
research, allowing the field to comprehensively test ideas proposed over a century ago and …

The invasion criterion: a common currency for ecological research

TN Grainger, JM Levine, B Gilbert - Trends in ecology & evolution, 2019 - cell.com
According to the invasion criterion, stable coexistence requires that all species in a
community increase in abundance when rare, which occurs when stabilizing mechanisms …

A process‐based metacommunity framework linking local and regional scale community ecology

PL Thompson, LM Guzman, L De Meester… - Ecology …, 2020 - Wiley Online Library
The metacommunity concept has the potential to integrate local and regional dynamics
within a general community ecology framework. To this end, the concept must move beyond …

Succession rate of microbial community causes flavor difference in strong-aroma Baijiu making process

Y Tan, H Zhong, D Zhao, H Du, Y Xu - International Journal of Food …, 2019 - Elsevier
Solid-state fermentation is a dynamic process involved with complex microbiome. Microbial
structure and succession significantly affect the yield and quality of fermentation productions …

The origin of niches and species in the bacterial world

F Baquero, TM Coque, JC Galán… - Frontiers in …, 2021 - frontiersin.org
Niches are spaces for the biological units of selection, from cells to complex communities. In
a broad sense,“species” are biological units of individuation. Niches do not exist without …

Improve niche colonization and microbial interactions for organohalide-respiring-bacteria-mediated remediation of chloroethene-contaminated sites

R Wu, R Shen, Z Liang, S Zheng, Y Yang… - Environmental …, 2023 - ACS Publications
Organohalide-respiring bacteria (OHRB)-mediated reductive dehalogenation is promising in
in situ bioremediation of chloroethene-contaminated sites. The bioremediation efficiency of …

Endophytes: the second layer of plant defense

F Dini-Andreote - Trends in plant science, 2020 - cell.com
Microorganisms in association with roots can protect plants against soil-borne diseases. A
recent study mechanistically revealed how root endophytes act as a second microbiological …

Plant-soil feedback: incorporating untested influential drivers and reconciling terminology

JR De Long, R Heinen, J Heinze, E Morriën, GK Png… - Plant and Soil, 2023 - Springer
Background Plants condition the soil in which they grow, thereby altering the performance of
subsequent plants growing in this soil. This phenomenon, known as plant-soil feedback …

Moving beyond the “diversity paradox”: the limitations of competition-based frameworks in understanding species diversity

A Simha, CJ Pardo-De la Hoz… - The American …, 2022 - journals.uchicago.edu
Over the past century, ecologists have attempted to understand patterns of species diversity
by showing stable coexistence arising from a baseline expectation of competitive exclusion …

Wide-ranging consequences of priority effects governed by an overarching factor

CR Chappell, MK Dhami, MC Bitter, L Czech… - Elife, 2022 - elifesciences.org
Priority effects, where arrival order and initial relative abundance modulate local species
interactions, can exert taxonomic, functional, and evolutionary influences on ecological …