Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non‐traditional microorganisms

P Calero, PI Nikel - Microbial Biotechnology, 2019 - Wiley Online Library
The last few years have witnessed an unprecedented increase in the number of novel
bacterial species that hold potential to be used for metabolic engineering. Historically …

Cold shock response in bacteria

Y Zhang, CA Gross - Annual Review of Genetics, 2021 - annualreviews.org
Bacteria often encounter temperature fluctuations in their natural habitats and must adapt to
survive. The molecular response of bacteria to sudden temperature upshift or downshift is …

[HTML][HTML] Genome-wide gene expression tuning reveals diverse vulnerabilities of M. tuberculosis

B Bosch, MA DeJesus, NC Poulton, W Zhang… - Cell, 2021 - cell.com
Antibacterial agents target the products of essential genes but rarely achieve complete
target inhibition. Thus, the all-or-none definition of essentiality afforded by traditional genetic …

The current state of SubtiWiki, the database for the model organism Bacillus subtilis

T Pedreira, C Elfmann, J Stülke - Nucleic Acids Research, 2022 - academic.oup.com
Bacillus subtilis is a Gram-positive model bacterium with extensive documented annotation.
However, with the rise of high-throughput techniques, the amount of complex data being …

Evolution-guided discovery of antibiotics that inhibit peptidoglycan remodelling

EJ Culp, N Waglechner, W Wang, AA Fiebig-Comyn… - Nature, 2020 - nature.com
Addressing the ongoing antibiotic crisis requires the discovery of compounds with novel
mechanisms of action that are capable of treating drug-resistant infections. Many antibiotics …

Emerging and evolving concepts in gene essentiality

G Rancati, J Moffat, A Typas, N Pavelka - Nature Reviews Genetics, 2018 - nature.com
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …

Advances and prospects of Bacillus subtilis cellular factories: from rational design to industrial applications

Y Gu, X Xu, Y Wu, T Niu, Y Liu, J Li, G Du, L Liu - Metabolic engineering, 2018 - Elsevier
Bacillus subtilis is the most characterized gram-positive bacterium that has significant
attributes, such as growing well on cheap carbon sources, possessing clear inherited …

SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis

B Zhu, J Stülke - Nucleic acids research, 2018 - academic.oup.com
Living cells are made up of individual parts, ie the genome, the proteins, the RNA and lipid
molecules as well as the metabolites and ions. However, life depends on the functional …

Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi

JM Peters, BM Koo, R Patino, GE Heussler… - Nature …, 2019 - nature.com
The vast majority of bacteria, including human pathogens and microbiome species, lack
genetic tools needed to systematically associate genes with phenotypes. This is the major …

[HTML][HTML] Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance

T Wang, C Guan, J Guo, B Liu, Y Wu, Z Xie… - Nature …, 2018 - nature.com
To fully exploit the microbial genome resources, a high-throughput experimental platform is
needed to associate genes with phenotypes at the genome level. We present here a novel …