Brassicaceae display variation in efficiency of photorespiratory carbon-recapturing mechanisms

U Schlüter, JW Bouvier, R Guerreiro… - Journal of …, 2023 - academic.oup.com
Carbon-concentrating mechanisms enhance the carboxylase efficiency of Rubisco by
providing supra-atmospheric concentrations of CO2 in its surroundings. Beside the C4 …

Helixer–de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model

F Holst, A Bolger, C Günther, J Maß, S Triesch, F Kindel… - BioRxiv, 2023 - biorxiv.org
Gene structural annotation is a critical step in obtaining biological knowledge from genome
sequences yet remains a major challenge in genomics projects. Current de novo Hidden …

Deep learning the cis-regulatory code for gene expression in selected model plants

FF Peleke, SM Zumkeller, M Gültas, A Schmitt… - Nature …, 2024 - nature.com
Elucidating the relationship between non-coding regulatory element sequences and gene
expression is crucial for understanding gene regulation and genetic variation. We explored …

A transcription factor module mediating C2 photosynthesis

PJ Dickinson, S Triesch, U Schlüter, APM Weber… - bioRxiv, 2023 - biorxiv.org
ABSTRACT C4 photosynthesis has arisen from the ancestral C3 state in over sixty lineages
of angio-sperms. It is widely accepted that an early step in C4 evolution is restriction of …

Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 intermediate Brassicaceae

S Triesch, V Reichel-Deland, JM Valderrama Martín… - bioRxiv, 2024 - biorxiv.org
Spatially confined gene expression determines cell identity and is fundamental to complex
plant traits. In the evolutionary transition from C3 to the more efficient C4 photosynthesis …