[PDF][PDF] On the dependency of cellular protein levels on mRNA abundance

Y Liu, A Beyer, R Aebersold - Cell, 2016 - cell.com
The question of how genomic information is expressed to determine phenotypes is of central
importance for basic and translational life science research and has been studied by …

Next-generation proteomics: towards an integrative view of proteome dynamics

AFM Altelaar, J Munoz, AJR Heck - Nature Reviews Genetics, 2013 - nature.com
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …

[HTML][HTML] A proximal-to-distal survey of healthy adult human small intestine and colon epithelium by single-cell transcriptomics

J Burclaff, RJ Bliton, KA Breau, MT Ok… - Cellular and molecular …, 2022 - Elsevier
Background & Aims Single-cell transcriptomics offer unprecedented resolution of tissue
function at the cellular level, yet studies analyzing healthy adult human small intestine and …

MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes

GC McAlister, DP Nusinow, MP Jedrychowski… - Analytical …, 2014 - ACS Publications
Multiplexed quantitation via isobaric chemical tags (eg, tandem mass tags (TMT) and
isobaric tags for relative and absolute quantitation (iTRAQ)) has the potential to revolutionize …

Global quantification of mammalian gene expression control

B Schwanhäusser, D Busse, N Li, G Dittmar… - Nature, 2011 - nature.com
Gene expression is a multistep process that involves the transcription, translation and
turnover of messenger RNAs and proteins. Although it is one of the most fundamental …

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+ 4'cell markers

J Muñoz, DE Stange, AG Schepers… - The EMBO …, 2012 - embopress.org
Two types of stem cells are currently defined in small intestinal crypts: cycling crypt base
columnar (CBC) cells and quiescent '+ 4'cells. Here, we combine transcriptomics with …

mRNA translational specialization by RBPMS presets the competence for cardiac commitment in hESCs

D Bartsch, K Kalamkar, G Ahuja, JW Lackmann… - Science …, 2023 - science.org
The blueprints of developing organs are preset at the early stages of embryogenesis.
Transcriptional and epigenetic mechanisms are proposed to preset developmental …

The nature of embryonic stem cells

G Martello, A Smith - Annual review of cell and developmental …, 2014 - annualreviews.org
Mouse embryonic stem (ES) cells perpetuate in vitro the broad developmental potential of
naïve founder cells in the preimplantation embryo. ES cells self-renew relentlessly in culture …

[HTML][HTML] Densely interconnected transcriptional circuits control cell states in human hematopoiesis

N Novershtern, A Subramanian, LN Lawton, RH Mak… - Cell, 2011 - cell.com
Though many individual transcription factors are known to regulate hematopoietic
differentiation, major aspects of the global architecture of hematopoiesis remain unknown …

Defining an essential transcription factor program for naive pluripotency

SJ Dunn, G Martello, B Yordanov, S Emmott, AG Smith - Science, 2014 - science.org
The gene regulatory circuitry through which pluripotent embryonic stem (ES) cells choose
between self-renewal and differentiation appears vast and has yet to be distilled into an …