Integrated cross-study datasets of genetic dependencies in cancer

C Pacini, JM Dempster, I Boyle, E Gonçalves… - Nature …, 2021 - nature.com
CRISPR-Cas9 viability screens are increasingly performed at a genome-wide scale across
large panels of cell lines to identify new therapeutic targets for precision cancer therapy …

[HTML][HTML] Functional genomics for cancer drug target discovery

B Haley, F Roudnicky - Cancer Cell, 2020 - cell.com
Functional genomics describes a field of biology that uses a range of approaches for
assessing gene function with high-throughput molecular, genetic, and cellular technologies …

The metabolic heterogeneity and flexibility of cancer stem cells

A Tanabe, H Sahara - Cancers, 2020 - mdpi.com
Simple Summary Cancer stem cells (CSCs) have been shown to be the main cause of
therapy resistance and cancer recurrence. An analysis of their biological properties has …

Agreement between two large pan-cancer CRISPR-Cas9 gene dependency data sets

JM Dempster, C Pacini, S Pantel, FM Behan… - Nature …, 2019 - nature.com
Genome-scale CRISPR-Cas9 viability screens performed in cancer cell lines provide a
systematic approach to identify cancer dependencies and new therapeutic targets. As …

Mind your media

S Lagziel, E Gottlieb, T Shlomi - Nature metabolism, 2020 - nature.com
Cell culture media are typically selected on the basis of common laboratory practices but
have major effects on the validity, reproducibility and physiological relevance of the scientific …

Multivariate analysis of metabolic state vulnerabilities across diverse cancer contexts reveals synthetically lethal associations

C Abecunas, AD Kidd, Y Jiang, H Zong… - Cell reports, 2024 - cell.com
Targeting the distinct metabolic needs of tumor cells has recently emerged as a promising
strategy for cancer therapy. The heterogeneous, context-dependent nature of cancer cell …

Discovery of putative tumor suppressors from CRISPR screens reveals rewired lipid metabolism in acute myeloid leukemia cells

WF Lenoir, M Morgado, PC DeWeirdt… - Nature …, 2021 - nature.com
CRISPR knockout fitness screens in cancer cell lines reveal many genes whose loss of
function causes cell death or loss of fitness or, more rarely, the opposite phenotype of faster …

Exploiting metabolic vulnerabilities for personalized therapy in acute myeloid leukemia

L Stuani, M Sabatier, JE Sarry - BMC biology, 2019 - Springer
Abstract Changes in cell metabolism and metabolic adaptation are hallmark features of
many cancers, including leukemia, that support biological processes involved into tumor …

Differential Gene Set Enrichment Analysis: a statistical approach to quantify the relative enrichment of two gene sets

JH Joly, WE Lowry, NA Graham - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation Gene Set Enrichment Analysis (GSEA) is an algorithm widely used to
identify statistically enriched gene sets in transcriptomic data. However, GSEA cannot …

The landscape of metabolic pathway dependencies in cancer cell lines

JH Joly, BTL Chew, NA Graham - PLoS Computational Biology, 2021 - journals.plos.org
The metabolic reprogramming of cancer cells creates metabolic vulnerabilities that can be
therapeutically targeted. However, our understanding of metabolic dependencies and the …