Computational strategies for the design of new enzymatic functions

K Świderek, I Tuñón, V Moliner, J Bertran - Archives of biochemistry and …, 2015 - Elsevier
In this contribution, recent developments in the design of biocatalysts are reviewed with
particular emphasis in the de novo strategy. Studies based on three different reactions …

[图书][B] Computational organic chemistry

SM Bachrach - 2014 - books.google.com
The Second Edition demonstrates how computational chemistry continues to shed new light
on organic chemistry The Second Edition of author Steven Bachrach's highly acclaimed …

Stepwise Diels–Alder: More than just an oddity? A computational mechanistic study

M Linder, T Brinck - The Journal of Organic Chemistry, 2012 - ACS Publications
We have employed hybrid DFT and SCS-MP2 calculations at the SMD-PCM–6-311++ G (2d,
2p)//6-31+ G (d) level to investigate the relationship between three possible channels for …

Physics‐based enzyme design: Predicting binding affinity and catalytic activity

S Sirin, DA Pearlman… - … : Structure, Function, and …, 2014 - Wiley Online Library
Computational enzyme design is an emerging field that has yielded promising success
stories, but where numerous challenges remain. Accurate methods to rapidly evaluate …

Computational study of a model system of enzyme-mediated [4+ 2] cycloaddition reaction

EG Gordeev, VP Ananikov - PLoS One, 2015 - journals.plos.org
A possible mechanistic pathway related to an enzyme-catalyzed [4+ 2] cycloaddition reac-
tion was studied by theoretical calculations at density functional (B3LYP, O3LYP, M062X) …

Computational design of a Diels–Alderase from a thermophilic esterase: the importance of dynamics

M Linder, AJ Johansson, TSG Olsson… - Journal of computer …, 2012 - Springer
A novel computational Diels–Alderase design, based on a relatively rare form of
carboxylesterase from Geobacillus stearothermophilus, is presented and theoretically …

Envisioning an enzymatic Diels–Alder reaction by in situ acid–base catalyzed diene generation

M Linder, AJ Johansson, B Manta, P Olsson… - Chemical …, 2012 - pubs.rsc.org
Envisioning an enzymatic Diels–Alder reaction by in situ acid–base catalyzed diene generation -
Chemical Communications (RSC Publishing) DOI:10.1039/C2CC31502E Royal Society of …

[HTML][HTML] Computational Enzyme Design: Advances, hurdles and possible ways forward

M Linder - Computational and Structural Biotechnology Journal, 2012 - Elsevier
This mini review addresses recent developments in computational enzyme design.
Successful protocols as well as known issues and limitations are discussed from an …

Computational Studies of Candida Antarctica Lipase B to Test Its Capability as a Starting Point To Redesign New Diels–Alderases

K Swiderek, V Moliner - The Journal of Physical Chemistry B, 2016 - ACS Publications
The design of new biocatalysts is a target that is receiving increasing attention. One of the
most popular reactions in this regard is the Diels–Alder cycloaddition because of its …

Artificial enzyme-catalyzed Diels-Alder cycloadditions

K Cottet, M Kolympadi, MC Lallemand… - Current Organic …, 2016 - ingentaconnect.com
Diels Alder cycloaddition is one of the most valuable reactions in organic chemistry for the
building of cyclic systems. Recent advances in metabolic engineering, computational …