Osteoporosis: a lifecourse approach

N Harvey, E Dennison, C Cooper - Journal of Bone and Mineral …, 2014 - academic.oup.com
It is becoming increasingly apparent that the risk of developing osteoporosis is accrued
throughout the entire lifecourse, even from as early as conception. Thus early growth is …

Cracking the code of human diseases using next‐generation sequencing: Applications, challenges, and perspectives

V Precone, V Del Monaco, MV Esposito… - BioMed research …, 2015 - Wiley Online Library
Next‐generation sequencing (NGS) technologies have greatly impacted on every field of
molecular research mainly because they reduce costs and increase throughput of DNA …

Methylation and gene expression differences between reproductive and sterile bumblebee workers

H Marshall, ZN Lonsdale, EB Mallon - Evolution Letters, 2019 - academic.oup.com
Phenotypic plasticity is the production of multiple phenotypes from a single genome and is
notably observed in social insects. Multiple epigenetic mechanisms have been associated …

The effects of the neonicotinoid imidacloprid on gene expression and DNA methylation in the buff-tailed bumblebee Bombus terrestris

PSA Bebane, BJ Hunt, M Pegoraro… - … of the Royal …, 2019 - royalsocietypublishing.org
Neonicotinoids are effective insecticides used on many important arable and horticultural
crops. They are nicotinic acetylcholine receptor agonists which disrupt the function of insect …

Addressing dispersion in mis‐measured multivariate binomial outcomes: A novel statistical approach for detecting differentially methylated regions in bisulfite …

K Zhao, K Oualkacha, Y Zeng, C Shen… - Statistics in …, 2024 - Wiley Online Library
Motivated by a DNA methylation application, this article addresses the problem of fitting and
inferring a multivariate binomial regression model for outcomes that are contaminated by …

Consequences of perinatal vitamin D deficiency on later bone health

RJ Moon, EM Curtis, JK Cleal, EM Dennison… - Feldman and Pike's …, 2024 - Elsevier
Vitamin D has important roles in calcium metabolism and in the prevention of rickets and
osteomalacia. There is also increasing evidence to suggest a role for vitamin D in …

A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation

K Zhao, K Oualkacha, L Lakhal-Chaieb, A Labbe… - …, 2021 - academic.oup.com
Identifying disease-associated changes in DNA methylation can help us gain a better
understanding of disease etiology. Bisulfite sequencing allows the generation of high …

[HTML][HTML] Exploring the ageing methylome in the model insect, Nasonia vitripennis

K Brink, CL Thomas, A Jones, TW Chan, EB Mallon - BMC genomics, 2024 - Springer
Background The ageing process is a multifaceted phenomenon marked by the gradual
deterioration of cellular and organismal functions, accompanied by an elevated …

Classification of RNA-Seq data via bagging support vector machines

G Zararsiz, D Goksuluk, S Korkmaz, V Eldem, IP Duru… - bioRxiv, 2014 - biorxiv.org
Abstract Background RNA sequencing (RNA-Seq) is a powerful technique for transcriptome
profiling of the organisms that uses the capabilities of next-generation sequencing (NGS) …

A smoothed EM-algorithm for DNA methylation profiles from sequencing-based methods in cell lines or for a single cell type

L Lakhal-Chaieb, CMT Greenwood… - … in genetics and …, 2017 - degruyter.com
We consider the assessment of DNA methylation profiles for sequencing-derived data from a
single cell type or from cell lines. We derive a kernel smoothed EM-algorithm, capable of …