Genetics of coronary artery disease

R McPherson, A Tybjaerg-Hansen - Circulation research, 2016 - Am Heart Assoc
Genetic factors contribute importantly to the risk of coronary artery disease (CAD), and in the
past decade, there has been major progress in this area. The tools applied include genome …

The BioPAX community standard for pathway data sharing

E Demir, MP Cary, S Paley, K Fukuda, C Lemer… - Nature …, 2010 - nature.com
Abstract Biological Pathway Exchange (BioPAX) is a standard language to represent
biological pathways at the molecular and cellular level and to facilitate the exchange of …

[HTML][HTML] Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence

A Holzinger, M Dehmer, F Emmert-Streib, R Cucchiara… - Information …, 2022 - Elsevier
Medical artificial intelligence (AI) systems have been remarkably successful, even
outperforming human performance at certain tasks. There is no doubt that AI is important to …

[HTML][HTML] Database resources of the national center for biotechnology information

NR Coordinators - Nucleic acids research, 2016 - ncbi.nlm.nih.gov
Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of
online resources for biological information and data, including the GenBank® nucleic acid …

A circadian gene expression atlas in mammals: implications for biology and medicine

R Zhang, NF Lahens, HI Ballance… - Proceedings of the …, 2014 - National Acad Sciences
To characterize the role of the circadian clock in mouse physiology and behavior, we used
RNA-seq and DNA arrays to quantify the transcriptomes of 12 mouse organs over time. We …

starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

JH Li, S Liu, H Zhou, LH Qu, JH Yang - Nucleic acids research, 2014 - academic.oup.com
Although microRNAs (miRNAs), other non-coding RNAs (ncRNAs)(eg lncRNAs,
pseudogenes and circRNAs) and competing endogenous RNAs (ceRNAs) have been …

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal

J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross… - Science …, 2013 - science.org
The cBioPortal for Cancer Genomics (http://cbioportal. org) provides a Web resource for
exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal …

Database resources of the national center for biotechnology information

NCBI Resource Coordinators - Nucleic acids research, 2016 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of
online resources for biological information and data, including the GenBank® nucleic acid …

iRegulon: from a gene list to a gene regulatory network using large motif and track collections

R Janky, A Verfaillie, H Imrichová… - PLoS computational …, 2014 - journals.plos.org
Identifying master regulators of biological processes and mapping their downstream gene
networks are key challenges in systems biology. We developed a computational method …

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

C Xie, X Mao, J Huang, Y Ding, J Wu… - Nucleic acids …, 2011 - academic.oup.com
High-throughput experimental technologies often identify dozens to hundreds of genes
related to, or changed in, a biological or pathological process. From these genes one wants …