Circulating DNA fragmentomics and cancer screening

AR Thierry - Cell Genomics, 2023 - cell.com
The high fragmentation of nuclear circulating DNA (cirDNA) relies on chromatin organization
and protection or packaging within mononucleosomes, the smallest and the most stabilized …

Circulating and urinary tumour DNA in urothelial carcinoma—Upper tract, lower tract and metastatic disease

KM Rose, HL Huelster, JJ Meeks, BM Faltas… - Nature Reviews …, 2023 - nature.com
Precision medicine has transformed the way urothelial carcinoma is managed. However,
current practices are limited by the availability of tissue samples for genomic profiling and …

Cell-Free DNA fragmentomics: the novel promising biomarker

T Qi, M Pan, H Shi, L Wang, Y Bai, Q Ge - International Journal of …, 2023 - mdpi.com
Cell-free DNA molecules are released into the plasma via apoptotic or necrotic events and
active release mechanisms, which carry the genetic and epigenetic information of its origin …

[HTML][HTML] Genomic approaches to cancer and minimal residual disease detection using circulating tumor DNA

NP Semenkovich, JJ Szymanski… - … for immunotherapy of …, 2023 - ncbi.nlm.nih.gov
Liquid biopsies using cell-free circulating tumor DNA (ctDNA) are being used frequently in
both research and clinical settings. ctDNA can be used to identify actionable mutations to …

Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network

Z Deng, Y Ji, B Han, Z Tan, Y Ren, J Gao, N Chen… - Genome Medicine, 2023 - Springer
Background Early detection of hepatocellular carcinoma (HCC) is important in order to
improve patient prognosis and survival rate. Methylation sequencing combined with neural …

Liquid biopsies beyond mutation calling: genomic and epigenomic features of cell-free DNA in cancer

AK Angeles, F Janke, S Bauer, P Christopoulos… - Cancers, 2021 - mdpi.com
Simple Summary Liquid biopsies provide a non-invasive means to diagnose and profile
tumors when tissue is not available. Sequence-based analysis of cell-free DNA (cfDNA) is …

Cell-free DNA fragmentomics: a promising biomarker for diagnosis, prognosis and prediction of response in breast Cancer

C Gianni, M Palleschi, F Merloni, G Di Menna… - International journal of …, 2022 - mdpi.com
Identifying novel circulating biomarkers predictive of response and informative about the
mechanisms of resistance, is the new challenge for breast cancer (BC) management. The …

Multi-faceted attributes of salivary cell-free DNA as liquid biopsy biomarkers for gastric cancer detection

N Swarup, J Cheng, I Choi, YJ Heo, M Kordi, M Aziz… - Biomarker …, 2023 - Springer
Background Recent advances in circulating cell-free DNA (cfDNA) analysis from biofluids
have opened new avenues for liquid biopsy (LB). However, current cfDNA LB assays are …

Urinary cell-free DNA in liquid biopsy and cancer management

B Salfer, F Li, DTW Wong, L Zhang - Clinical chemistry, 2022 - academic.oup.com
Background The current methodology used to detect, diagnose, and monitor many types of
cancers requires invasive tissue biopsy testing. Recently, liquid biopsy using blood, plasma …

Diagnostic potential of circulating tumor cells, urinary microRNA, and urinary cell-free DNA for bladder cancer: A review

D Koguchi, K Matsumoto, I Shiba, T Harano… - International Journal of …, 2022 - mdpi.com
Early detection of primary bladder cancer (BCa) is vital, because stage and grade have
been generally accepted not only as categorical but also as prognostic factors in patients …