[HTML][HTML] Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems

M Djaffardjy, G Marchment, C Sebe, R Blanchet… - Computational and …, 2023 - Elsevier
Data analysis pipelines are now established as an effective means for specifying and
executing bioinformatics data analysis and experiments. While scripting languages …

[HTML][HTML] Globus automation services: Research process automation across the space–time continuum

R Chard, J Pruyne, K McKee, J Bryan… - Future Generation …, 2023 - Elsevier
Research process automation–the reliable, efficient, and reproducible execution of linked
sets of actions on scientific instruments, computers, data stores, and other resources–has …

Workflows community summit 2022: A roadmap revolution

RF da Silva, RM Badia, V Bala, D Bard… - arXiv preprint arXiv …, 2023 - arxiv.org
Scientific workflows have become integral tools in broad scientific computing use cases.
Science discovery is increasingly dependent on workflows to orchestrate large and complex …

Wfbench: Automated generation of scientific workflow benchmarks

T Coleman, H Casanova, K Maheshwari… - 2022 IEEE/ACM …, 2022 - ieeexplore.ieee.org
The prevalence of scientific workflows with high computational demands calls for their
execution on various distributed computing platforms, including large-scale leadership-class …

[HTML][HTML] Validity constraints for data analysis workflows

F Schintke, K Belhajjame, N De Mecquenem… - Future Generation …, 2024 - Elsevier
Porting a scientific data analysis workflow (DAW) to a cluster infrastructure, a new software
stack, or even only a new dataset with some notably different properties is often challenging …

ZnTrack--Data as Code

F Zills, M Schäfer, S Tovey, J Kästner… - arXiv preprint arXiv …, 2024 - arxiv.org
The past decade has seen tremendous breakthroughs in computation and there is no
indication that this will slow any time soon. Machine learning, large-scale computing …

Contract-driven design of scientific data analysis workflows

AD Vu, JA Sparka, N De Mecquenem… - 2023 IEEE 19th …, 2023 - ieeexplore.ieee.org
Software systems enabling large-scale data analysis workflows (DAWs) are a key
technology for many scientific disciplines, as they allow extracting new insights from …

An exploration of online-simulation-driven portfolio scheduling in workflow management systems

J McDonald, J Dobbs, YC Wong, RF Da Silva… - Future Generation …, 2024 - Elsevier
Abstract Workflow Management Systems used to automate the execution of scientific
workflow applications on parallel and distributed computing platforms must make scheduling …

Automated generation of scientific workflow generators with WfChef

T Coleman, H Casanova, RF Da Silva - Future Generation Computer …, 2023 - Elsevier
Scientific workflow applications have gained significant importance, and their automated
and efficient execution on large-scale computing platforms has been the subject of extensive …

[HTML][HTML] A qualitative assessment of using ChatGPT as large language model for scientific workflow development

M Sänger, N De Mecquenem, KE Lewińska… - …, 2024 - academic.oup.com
Background Scientific workflow systems are increasingly popular for expressing and
executing complex data analysis pipelines over large datasets, as they offer reproducibility …