[HTML][HTML] Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
M Djaffardjy, G Marchment, C Sebe, R Blanchet… - Computational and …, 2023 - Elsevier
Data analysis pipelines are now established as an effective means for specifying and
executing bioinformatics data analysis and experiments. While scripting languages …
executing bioinformatics data analysis and experiments. While scripting languages …
[HTML][HTML] Globus automation services: Research process automation across the space–time continuum
Research process automation–the reliable, efficient, and reproducible execution of linked
sets of actions on scientific instruments, computers, data stores, and other resources–has …
sets of actions on scientific instruments, computers, data stores, and other resources–has …
Workflows community summit 2022: A roadmap revolution
RF da Silva, RM Badia, V Bala, D Bard… - arXiv preprint arXiv …, 2023 - arxiv.org
Scientific workflows have become integral tools in broad scientific computing use cases.
Science discovery is increasingly dependent on workflows to orchestrate large and complex …
Science discovery is increasingly dependent on workflows to orchestrate large and complex …
Wfbench: Automated generation of scientific workflow benchmarks
The prevalence of scientific workflows with high computational demands calls for their
execution on various distributed computing platforms, including large-scale leadership-class …
execution on various distributed computing platforms, including large-scale leadership-class …
[HTML][HTML] Validity constraints for data analysis workflows
F Schintke, K Belhajjame, N De Mecquenem… - Future Generation …, 2024 - Elsevier
Porting a scientific data analysis workflow (DAW) to a cluster infrastructure, a new software
stack, or even only a new dataset with some notably different properties is often challenging …
stack, or even only a new dataset with some notably different properties is often challenging …
Contract-driven design of scientific data analysis workflows
AD Vu, JA Sparka, N De Mecquenem… - 2023 IEEE 19th …, 2023 - ieeexplore.ieee.org
Software systems enabling large-scale data analysis workflows (DAWs) are a key
technology for many scientific disciplines, as they allow extracting new insights from …
technology for many scientific disciplines, as they allow extracting new insights from …
An exploration of online-simulation-driven portfolio scheduling in workflow management systems
J McDonald, J Dobbs, YC Wong, RF Da Silva… - Future Generation …, 2024 - Elsevier
Abstract Workflow Management Systems used to automate the execution of scientific
workflow applications on parallel and distributed computing platforms must make scheduling …
workflow applications on parallel and distributed computing platforms must make scheduling …
Automated generation of scientific workflow generators with WfChef
Scientific workflow applications have gained significant importance, and their automated
and efficient execution on large-scale computing platforms has been the subject of extensive …
and efficient execution on large-scale computing platforms has been the subject of extensive …
[HTML][HTML] A qualitative assessment of using ChatGPT as large language model for scientific workflow development
M Sänger, N De Mecquenem, KE Lewińska… - …, 2024 - academic.oup.com
Background Scientific workflow systems are increasingly popular for expressing and
executing complex data analysis pipelines over large datasets, as they offer reproducibility …
executing complex data analysis pipelines over large datasets, as they offer reproducibility …