[HTML][HTML] The open EEGLAB portal interface: High-performance computing with EEGLAB

R Martínez-Cancino, A Delorme, D Truong, F Artoni… - NeuroImage, 2021 - Elsevier
EEGLAB signal processing environment is currently the leading open-source software for
processing electroencephalographic (EEG) data. The Neuroscience Gateway (NSG …

Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON

WW Lytton, AH Seidenstein, S Dura-Bernal… - Neural …, 2016 - ieeexplore.ieee.org
Large multiscale neuronal network simulations are of increasing value as more big data are
gathered about brain wiring and organization under the auspices of a current major …

Petabyte-scale multi-morphometry of single neurons for whole brains

S Jiang, Y Wang, L Liu, L Ding, Z Ruan, HW Dong… - Neuroinformatics, 2022 - Springer
Recent advances in brain imaging allow producing large amounts of 3-D volumetric data
from which morphometry data is reconstructed and measured. Fine detailed structural …

A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms

P Balbi, P Massobrio… - PLoS computational …, 2017 - journals.plos.org
Modelling ionic channels represents a fundamental step towards developing biologically
detailed neuron models. Until recently, the voltage-gated ion channels have been mainly …

Functional specification of CCK+ interneurons by alternative isoforms of Kv4. 3 auxiliary subunits

VJ Oláh, D Lukacsovich, J Winterer, A Arszovszki… - Elife, 2020 - elifesciences.org
CCK-expressing interneurons (CCK+ INs) are crucial for controlling hippocampal activity.
We found two firing phenotypes of CCK+ INs in rat hippocampal CA3 area; either …

The CIPRES workbench: a flexible framework for creating science gateways

MA Miller, T Schwartz, P Hoover, K Yoshimoto… - Proceedings of the …, 2015 - dl.acm.org
Here we describe the CIPRES Workbench (CW), an open source software framework for
creating new science gateways with minimal overhead. The CW is a web application that …

Towards building a trustworthy pipeline integrating Neuroscience Gateway and Open Science Chain

S Sivagnanam, S Yeu, K Lin, S Sakai, F Garzon… - Database, 2024 - academic.oup.com
When the scientific dataset evolves or is reused in workflows creating derived datasets, the
integrity of the dataset with its metadata information, including provenance, needs to be …

The neuroscience gateway: enabling large scale modeling and data processing in neuroscience

S Sivagnanam, K Yoshimoto, NT Carnevale… - Proceedings of the …, 2018 - dl.acm.org
The NSF funded Neuroscience Gateway (NSG) has been in operation since the early 2013.
We originally designed NSG to reduce technical and administrative barriers that exist to …

Sleep waves in a large‐scale corticothalamic model constrained by activities intrinsic to neocortical networks and single thalamic neurons

M Dervinis, V Crunelli - CNS Neuroscience & Therapeutics, 2024 - Wiley Online Library
Aim Many biophysical and non‐biophysical models have been able to reproduce the
corticothalamic activities underlying different EEG sleep rhythms but none of them included …

Neuroscience gateway–software dissemination and large-scale modeling and data processing on supercomputing resources

A Majumdar, S Sivagnanam, K Yoshimoto… - … and Experience in …, 2023 - dl.acm.org
The Neuroscience Gateway (NSG) has been in operation since 2013. Initially it started out
as a gateway providing high performance computing (HPC) resources to computational …