LitCovid: an open database of COVID-19 literature

Q Chen, A Allot, Z Lu - Nucleic acids research, 2021 - academic.oup.com
Since the outbreak of the current pandemic in 2020, there has been a rapid growth of
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

Q Chen, A Allot, R Leaman, R Islamaj, J Du, L Fang… - Database, 2022 - academic.oup.com
Abstract The coronavirus disease 2019 (COVID-19) pandemic has been severely impacting
global society since December 2019. The related findings such as vaccine and drug …

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

FB Bastian, J Roux, A Niknejad, A Comte… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …

LitCovid in 2022: an information resource for the COVID-19 literature

Q Chen, A Allot, R Leaman, CH Wei… - Nucleic Acids …, 2023 - academic.oup.com
Abstract LitCovid (https://www. ncbi. nlm. nih. gov/research/coronavirus/)—first launched in
February 2020—is a first-of-its-kind literature hub for tracking up-to-date published research …

[HTML][HTML] Health datasets as assets: Blockchain-based valuation and transaction methods

WM Charles, BM Delgado - Blockchain in Healthcare Today, 2022 - ncbi.nlm.nih.gov
There is increasing recognition about health-oriented datasets that could be regarded as
intangible assets: distinct assets with future economic benefits but without physical …

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII

R Islamaj, PT Lai, CH Wei, L Luo, T Almeida… - Database, 2024 - academic.oup.com
Abstract The BioRED track at BioCreative VIII calls for a community effort to identify,
semantically categorize, and highlight the novelty factor of the relationships between …

Computational resources for identifying and describing proteins driving liquid–liquid phase separation

R Pancsa, W Vranken, B Mészáros - Briefings in Bioinformatics, 2021 - academic.oup.com
One of the most intriguing fields emerging in current molecular biology is the study of
membraneless organelles formed via liquid–liquid phase separation (LLPS). These …

LitSuggest: a web-based system for literature recommendation and curation using machine learning

A Allot, K Lee, Q Chen, L Luo, Z Lu - Nucleic acids research, 2021 - academic.oup.com
Searching and reading relevant literature is a routine practice in biomedical research.
However, it is challenging for a user to design optimal search queries using all the keywords …

ECO: the Evidence and Conclusion Ontology, an update for 2022

S Nadendla, R Jackson, J Munro… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Evidence and Conclusion Ontology (ECO) is a community resource that
provides an ontology of terms used to capture the type of evidence that supports biomedical …

Database commons: a catalog of worldwide biological databases

L Ma, D Zou, L Liu, H Shireen, AA Abbasi… - Genomics …, 2023 - academic.oup.com
Biological databases serve as a global fundamental infrastructure for the worldwide
scientific community, which dramatically aid the transformation of big data into knowledge …