[HTML][HTML] PCR inhibition in qPCR, dPCR and MPS—mechanisms and solutions

M Sidstedt, P Rådström, J Hedman - Analytical and bioanalytical chemistry, 2020 - Springer
DNA analysis has seen an incredible development in terms of instrumentation, assays and
applications over the last years. Massively parallel sequencing (MPS) and digital PCR are …

PCR inhibitors–occurrence, properties and removal

C Schrader, A Schielke, L Ellerbroek… - Journal of applied …, 2012 - academic.oup.com
The polymerase chain reaction (PCR) is increasingly used as the standard method for
detection and characterization of microorganisms and genetic markers in a variety of sample …

[HTML][HTML] A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems

BC Stoeckle, S Beggel, AF Cerwenka, E Motivans… - PLoS …, 2017 - journals.plos.org
The use of environmental DNA (eDNA) to determine the presence and distribution of aquatic
organisms has become an important tool to monitor and investigate freshwater communities …

Overcoming inhibition in real-time diagnostic PCR

J Hedman, P Rådström - PCR detection of microbial pathogens, 2013 - Springer
PCR is an important and powerful tool in several fields, including clinical diagnostics, food
analysis, and forensic analysis. In theory, PCR enables the detection of one single cell or …

[HTML][HTML] Humic substances cause fluorescence inhibition in real-time polymerase chain reaction

M Sidstedt, L Jansson, E Nilsson, L Noppa… - Analytical …, 2015 - Elsevier
Real-time polymerase chain reaction (qPCR) is the cornerstone of DNA analysis, enabling
detection and quantification of minute nucleic acid amounts. However, PCR-based analysis …

[PDF][PDF] Assessing PCR inhibition from humic substances

CD Matheson, C Gurney, N Esau… - The Open Enzyme …, 2010 - researchgate.net
Inhibition remains the greatest methodological challenge in molecular analysis of buried
biological remains. Inhibitory compounds associated with soil environments comprise …

Development and Validation of the AmpFℓSTR® MiniFilerTM PCR Amplification Kit: A MiniSTR Multiplex for the Analysis of Degraded and/or PCR Inhibited DNA*

JJ Mulero, CW Chang, RE Lagacé… - Journal of forensic …, 2008 - Wiley Online Library
DNA typing of degraded DNA samples can be a challenging task when using the current
commercially available multiplex short tandem repeat (STR) analysis kits. However, the …

[HTML][HTML] Sequencing and structure probing of long RNAs using MarathonRT: a next-generation reverse transcriptase

LT Guo, RL Adams, H Wan, NC Huston… - Journal of molecular …, 2020 - Elsevier
Reverse transcriptase (RT) enzymes are indispensable tools for interrogating diverse
aspects of RNA metabolism and transcriptome composition. Due to the growing interest in …

Exploring the root microbiome: extracting bacterial community data from the soil, rhizosphere, and root endosphere

T Simmons, DF Caddell, S Deng… - JoVE (Journal of …, 2018 - jove.com
The intimate interaction between plant host and associated microorganisms is crucial in
determining plant fitness, and can foster improved tolerance to abiotic stresses and …

A quantitative approach to detect and overcome PCR inhibition in ancient DNA extracts

CE King, R Debruyne, M Kuch, C Schwarz… - …, 2009 - Taylor & Francis
Inhibition is problematic in many applications of PCR, particularly those involving degraded
or low amounts of template DNA, when simply diluting the extract is undesirable. Two basic …