Virtual screening algorithms in drug discovery: A review focused on machine and deep learning methods

TA Oliveira, MP Silva, EHB Maia, AM Silva… - Drugs and Drug …, 2023 - mdpi.com
Drug discovery and repositioning are important processes for the pharmaceutical industry.
These processes demand a high investment in resources and are time-consuming. Several …

Machine learning techniques and drug design

JC Gertrudes, VG Maltarollo, RA Silva… - Current medicinal …, 2012 - ingentaconnect.com
The interest in the application of machine learning techniques (MLT) as drug design tools is
growing in the last decades. The reason for this is related to the fact that the drug design is …

Quantum chemical descriptors in quantitative structure–activity relationship models and their applications

L Wang, J Ding, L Pan, D Cao, H Jiang… - … and Intelligent Laboratory …, 2021 - Elsevier
With the accumulation of chemical and biological experimental data and the continuous
development of mathematical statistical algorithms, quantitative structure–activity …

Novel and efficient techniques in the discovery of antioxidant peptides

Y Zhang, Y Li, T Ren, P Xiao, J Duan - Critical Reviews in Food …, 2023 - Taylor & Francis
As a research hotspot in food science and nutrition, antioxidant peptides can function by
scavenging free radicals, inhibiting peroxides, and chelating metal ions. Therefore, how to …

Integrated approach to structure-based enzymatic drug design: molecular modeling, spectroscopy, and experimental bioactivity

B Honarparvar, T Govender, GEM Maguire… - Chemical …, 2014 - ACS Publications
Analysis of the literature involving computational modeling of diseases and drug design with
the aid of experimental spectroscopic techniques reveals that this specific combination of …

Pharmacokinetic properties and in silico ADME modeling in drug discovery

KM Honorio, TL Moda, AD Andricopulo - Medicinal Chemistry, 2013 - ingentaconnect.com
The discovery and development of a new drug are time-consuming, difficult and expensive.
This complex process has evolved from classical methods into an integration of modern …

A small chaperone improves folding and routing of rhodopsin mutants linked to inherited blindness

P Behnen, A Felline, A Comitato, MT Di Salvo… - Iscience, 2018 - cell.com
The autosomal dominant form of retinitis pigmentosa (adRP) is a blindness-causing
conformational disease largely linked to mutations of rhodopsin. Molecular simulations …

Perspectives on Computational Enzyme Modeling: From Mechanisms to Design and Drug Development

K Nam, Y Shao, DT Major, M Wolf-Watz - ACS omega, 2024 - ACS Publications
Understanding enzyme mechanisms is essential for unraveling the complex molecular
machinery of life. In this review, we survey the field of computational enzymology …

[PDF][PDF] Update 1 of: computational modeling approaches to structure–function analysis of G protein-coupled receptors

F Fanelli, PG De Benedetti - Chemical Reviews-Columbus, 2011 - researchgate.net
Any aspect of cell activity is regulated by extracellular signals that are recognized, decoded,
and transduced inside the cell via different classes of plasma membrane receptors. 1À3 G …

Implementing QM in docking calculations: is it a waste of computational time?

AA Adeniyi, MES Soliman - Drug Discovery Today, 2017 - Elsevier
Highlights•Docking programs depends on quality of the search algorithm and the scoring
functions•There are problems and limitations of docking scoring methods•Many factors are …