Understanding nucleic acid–ion interactions
Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the
folding and dynamics of RNA and DNA and their complexes with proteins and with each …
folding and dynamics of RNA and DNA and their complexes with proteins and with each …
Structure and dynamics of cross-linked actin networks
O Lieleg, MMAE Claessens, AR Bausch - Soft Matter, 2010 - pubs.rsc.org
The actin cytoskeleton, a network of protein-polymers, is responsible for the mechanical
stability of cells. This biopolymer network is also crucial for processes that require spatial …
stability of cells. This biopolymer network is also crucial for processes that require spatial …
Improving implicit solvent simulations: a Poisson-centric view
NA Baker - Current opinion in structural biology, 2005 - Elsevier
Recent developments in implicit solvent models may be compared in terms of accuracy and
computational efficiency. Based on improvements in the accuracy of generalized Born …
computational efficiency. Based on improvements in the accuracy of generalized Born …
Structure and interactions of biological helices
AA Kornyshev, DJ Lee, S Leikin, A Wynveen - Reviews of Modern Physics, 2007 - APS
Helices are essential building blocks of living organisms, be they molecular fragments of
proteins (α-helices), macromolecules (DNA and collagen), or multimolecular assemblies …
proteins (α-helices), macromolecules (DNA and collagen), or multimolecular assemblies …
Biomolecular electrostatics and solvation: a computational perspective
An understanding of molecular interactions is essential for insight into biological systems at
the molecular scale. Among the various components of molecular interactions, electrostatics …
the molecular scale. Among the various components of molecular interactions, electrostatics …
Interaction of arginine with proteins and the mechanism by which it inhibits aggregation
D Shukla, BL Trout - The Journal of Physical Chemistry B, 2010 - ACS Publications
Aqueous arginine solutions are used extensively for inhibiting protein aggregation. There
are several theories proposed to explain the effect of arginine on protein stability, but the …
are several theories proposed to explain the effect of arginine on protein stability, but the …
Natural supramolecular building blocks: from virus coat proteins to viral nanoparticles
Viruses belong to a fascinating class of natural supramolecular structures, composed of
multiple copies of coat proteins (CPs) that assemble into different shapes with a variety of …
multiple copies of coat proteins (CPs) that assemble into different shapes with a variety of …
Perspective: Coulomb fluids—Weak coupling, strong coupling, in between and beyond
We present a personal view on the current state of statistical mechanics of Coulomb fluids
with special emphasis on the interactions between macromolecular surfaces, concentrating …
with special emphasis on the interactions between macromolecular surfaces, concentrating …
[HTML][HTML] A kinetic study of the growth of fatty acid vesicles
IA Chen, JW Szostak - Biophysical journal, 2004 - cell.com
Membrane vesicles composed of fatty acids can be made to grow and divide under
laboratory conditions, and thus provide a model system relevant to the emergence of cellular …
laboratory conditions, and thus provide a model system relevant to the emergence of cellular …
The structure of aqueous guanidinium chloride solutions
PE Mason, GW Neilson, JE Enderby… - Journal of the …, 2004 - ACS Publications
The combination of neutron diffraction with isotopic substitution (NDIS) experiments and
molecular dynamics (MD) simulations to characterize the structuring in an aqueous solution …
molecular dynamics (MD) simulations to characterize the structuring in an aqueous solution …