Endogenous toxic metabolites and implications in cancer therapy

N Lee, ME Spears, AE Carlisle, D Kim - Oncogene, 2020 - nature.com
It is well recognized that many metabolic enzymes play essential roles in cancer cells in
producing building blocks such as nucleotides, which are required in greater amounts due …

BioTransformer 3.0—a web server for accurately predicting metabolic transformation products

DS Wishart, S Tian, D Allen, E Oler… - Nucleic acids …, 2022 - academic.oup.com
Abstract BioTransformer 3.0 (https://biotransformer. ca) is a freely available web server that
supports accurate, rapid and comprehensive in silico metabolism prediction. It combines …

Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions

JG Jeffryes, C Lerma-Ortiz, F Liu, A Golubev… - Metabolic …, 2022 - Elsevier
Spontaneous reactions between metabolites are often neglected in favor of emphasizing
enzyme-catalyzed chemistry because spontaneous reaction rates are assumed to be …

A Computational Biology Study on the Structure and Dynamics Determinants of Thermal Stability of the Chitosanase from Aspergillus fumigatus

Q Wang, S Liu, K Li, R Xing, X Chen, P Li - International Journal of …, 2023 - mdpi.com
Environmentally friendly and efficient biodegradation with chitosanase for degrading
chitosan to oligosaccharide has been gaining more importance. Here, we studied a …

Efficient Enumeration of Branched Novel Biochemical Pathways Using a Probabilistic Technique

Z Xu, R Mahadevan - Industrial & Engineering Chemistry …, 2022 - ACS Publications
The advancement in the field of synthetic biology has allowed metabolic engineers to
construct de novo pathways in engineered cells. The promiscuous activities of many …