Systematic mapping of genetic interaction networks

SJ Dixon, M Costanzo, A Baryshnikova… - Annual review of …, 2009 - annualreviews.org
Genetic interactions influencing a phenotype of interest can be identified systematically
using libraries of genetic tools that perturb biological systems in a defined manner …

FindFoci: a focus detection algorithm with automated parameter training that closely matches human assignments, reduces human inconsistencies and increases …

AD Herbert, AM Carr, E Hoffmann - PloS one, 2014 - journals.plos.org
Accurate and reproducible quantification of the accumulation of proteins into foci in cells is
essential for data interpretation and for biological inferences. To improve reproducibility …

Getting the whole picture: combining throughput with content in microscopy

N Rimon, M Schuldiner - Journal of cell science, 2011 - journals.biologists.com
The increasing availability and performance of automated scientific equipment in the past
decades have brought about a revolution in the biological sciences. The ease with which …

[HTML][HTML] Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle

A Litsios, BT Grys, OZ Kraus, H Friesen, C Ross… - Cell, 2024 - cell.com
Cell cycle progression relies on coordinated changes in the composition and subcellular
localization of the proteome. By applying two distinct convolutional neural networks on …

YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae

H Kim, J Shin, E Kim, H Kim, S Hwang… - Nucleic acids …, 2014 - academic.oup.com
Saccharomyces cerevisiae, ie baker's yeast, is a widely studied model organism in
eukaryote genetics because of its simple protocols for genetic manipulation and phenotype …

[HTML][HTML] Scp160-dependent mRNA trafficking mediates pheromone gradient sensing and chemotropism in yeast

R Gelin-Licht, S Paliwal, P Conlon, A Levchenko… - Cell reports, 2012 - cell.com
Summary mRNAs encoding polarity and secretion factors (POLs) target the incipient bud site
in yeast for localized translation during division. In pheromone-treated cells we now find that …

Ligand-induced activation of a formin–NPF pair leads to collaborative actin nucleation

BR Graziano, EM Jonasson, JG Pullen, CJ Gould… - Journal of Cell …, 2013 - rupress.org
Formins associate with other nucleators and nucleation-promoting factors (NPFs) to
stimulate collaborative actin assembly, but the mechanisms regulating these interactions …

The Toxicity of Polystyrene-Based Nanoparticles in Saccharomyces cerevisiae Is Associated with Nanoparticle Charge and Uptake Mechanism

O Ozbek, K O. Ulgen, N Ileri Ercan - Chemical Research in …, 2021 - ACS Publications
Polystyrene latex (PSL) nanoparticles (NPs), 1, 2-dioleoyl-sn-glycero-3-phosphocholine
(DOPC) liposomes, and hybrid NPs that have different concentrations, sizes, surface …

Analysis of nitrated proteins in Saccharomyces cerevisiae involved in mating signal transduction

JW Kang, NY Lee, KC Cho, MY Lee, DY Choi… - …, 2015 - Wiley Online Library
Protein tyrosine nitration (PTN) is a PTM that regulates signal transduction and inflammatory
responses, and is related to neurodegenerative and cardiovascular diseases. The cellular …

The adaptor protein Ste50 directly modulates yeast MAPK signaling specificity through differential connections of its RA domain

N Sharmeen, T Sulea, M Whiteway… - Molecular Biology of the …, 2019 - Am Soc Cell Biol
Discriminating among diverse environmental stimuli is critical for organisms to ensure their
proper development, homeostasis, and survival. Saccharomyces cerevisiae regulates …