[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

Computational analysis of cancer genome sequencing data

I Cortés-Ciriano, DC Gulhan, JJK Lee… - Nature Reviews …, 2022 - nature.com
Distilling biologically meaningful information from cancer genome sequencing data requires
comprehensive identification of somatic alterations using rigorous computational methods …

Graph regularized nonnegative matrix factorization for community detection in attributed networks

K Berahmand, M Mohammadi… - … on Network Science …, 2022 - ieeexplore.ieee.org
Community detection has become an important research topic in machine learning due to
the proliferation of network data. However, most existing methods have been developed …

Deciphering signatures of mutational processes operative in human cancer

LB Alexandrov, S Nik-Zainal, DC Wedge, PJ Campbell… - Cell reports, 2013 - cell.com
The genome of a cancer cell carries somatic mutations that are the cumulative
consequences of the DNA damage and repair processes operative during the cellular …

Fast, generic, and reliable control and simulation of soft robots using model order reduction

O Goury, C Duriez - IEEE Transactions on Robotics, 2018 - ieeexplore.ieee.org
Obtaining an accurate mechanical model of a soft deformable robot compatible with the
computation time imposed by robotic applications is often considered an unattainable goal …

Dimensional reduction of nonlinear finite element dynamic models with finite rotations and energy‐based mesh sampling and weighting for computational efficiency

C Farhat, P Avery, T Chapman… - International Journal for …, 2014 - Wiley Online Library
SUMMARY A rigorous computational framework for the dimensional reduction of discrete,
high‐fidelity, nonlinear, finite element structural dynamics models is presented. It is based …

Inertial proximal alternating linearized minimization (iPALM) for nonconvex and nonsmooth problems

T Pock, S Sabach - SIAM journal on imaging sciences, 2016 - SIAM
In this paper we study nonconvex and nonsmooth optimization problems with semialgebraic
data, where the variables vector is split into several blocks of variables. The problem …

A survey on deep matrix factorizations

P De Handschutter, N Gillis, X Siebert - Computer Science Review, 2021 - Elsevier
Constrained low-rank matrix approximations have been known for decades as powerful
linear dimensionality reduction techniques able to extract the information contained in large …

Target recognition in synthetic aperture radar images via non‐negative matrix factorisation

Z Cui, Z Cao, J Yang, J Feng… - IET Radar, Sonar & …, 2015 - Wiley Online Library
This study proposes a novel non‐negative matrix factorisation (NMF) variant L1/2‐NMF after
visualisation and analysis of the process of target recognition via NMF for synthetic aperture …

Graph non-negative matrix factorization with alternative smoothed regularizations

K Chen, H Che, X Li, MF Leung - Neural Computing and Applications, 2023 - Springer
Graph non-negative matrix factorization (GNMF) can discover the data's intrinsic low-
dimensional structure embedded in the high-dimensional space. So, it has superior …