Identification of protein coding regions using the modified Gabor-wavelet transform
An important topic in genomic sequence analysis is the identification of protein coding
regions. In this context, several coding DNA model-independent methods based on the …
regions. In this context, several coding DNA model-independent methods based on the …
I say to myself:“What a fractional world!”
JAT Machado - Fract. Calc. Appl. Anal, 2011 - degruyter.com
This paper discusses several complex systems in the perspective of fractional dynamics. For
prototype systems are considered the cases of deoxyribonucleic acid decoding, financial …
prototype systems are considered the cases of deoxyribonucleic acid decoding, financial …
Genome analysis with inter-nucleotide distances
Motivation: DNA sequences can be represented by sequences of four symbols, but it is often
useful to convert the symbols into real or complex numbers for further analysis. Several …
useful to convert the symbols into real or complex numbers for further analysis. Several …
Fractional dynamics in DNA
JAT Machado, AC Costa, MD Quelhas - Communications in Nonlinear …, 2011 - Elsevier
This paper addresses the DNA code analysis in the perspective of dynamics and fractional
calculus. Several mathematical tools are selected to establish a quantitative method without …
calculus. Several mathematical tools are selected to establish a quantitative method without …
Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming
V Pugacheva, A Korotkov, E Korotkov - Statistical Applications in …, 2016 - degruyter.com
The aim of this study was to show that amino acid sequences have a latent periodicity with
insertions and deletions of amino acids in unknown positions of the analyzed sequence …
insertions and deletions of amino acids in unknown positions of the analyzed sequence …
[HTML][HTML] Fractional order description of DNA
JAT Machado - Applied Mathematical Modelling, 2015 - Elsevier
This study addresses the deoxyribonucleic acid (DNA) and proposes a procedure based on
the association of statistics, information theory, signal processing, Fourier analysis and …
the association of statistics, information theory, signal processing, Fourier analysis and …
Digital signal processing in the analysis of genomic sequences
JV Lorenzo-Ginori, A Rodríguez-Fuentes… - Current …, 2009 - ingentaconnect.com
Digital Signal Processing (DSP) applications in Bioinformatics have received great attention
in recent years, where new effective methods for genomic sequence analysis, such as the …
in recent years, where new effective methods for genomic sequence analysis, such as the …
Identification of protein coding regions using antinotch filters
MK Hota, VK Srivastava - Digital signal processing, 2012 - Elsevier
A major area of research in genomic sequence analysis is the identification of protein coding
regions using the period-3 property. Previously antinotch filter has been used for this …
regions using the period-3 property. Previously antinotch filter has been used for this …
[HTML][HTML] Detection of exon location in eukaryotic DNA using a fuzzy adaptive Gabor wavelet transform
The existing model-independent methods for the detection of exons in DNA could not prove
to be ideal as commonly employed fixed window length strategy produces spectral leakage …
to be ideal as commonly employed fixed window length strategy produces spectral leakage …
Comparative analysis of periodicity search methods in DNA sequences
YM Suvorova, MA Korotkova, EV Korotkov - Computational biology and …, 2014 - Elsevier
To determine the periodicity of a DNA sequence, different spectral approaches are applied
(discrete Fourier transform (DFT), autocorrelation (CORR), information decomposition (ID) …
(discrete Fourier transform (DFT), autocorrelation (CORR), information decomposition (ID) …