RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

MA Matzke, RA Mosher - Nature Reviews Genetics, 2014 - nature.com
RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …

Long noncoding RNAs in plants

AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

[HTML][HTML] A role for small RNAs in DNA double-strand break repair

W Wei, Z Ba, M Gao, Y Wu, Y Ma, S Amiard, CI White… - Cell, 2012 - cell.com
Eukaryotes have evolved complex mechanisms to repair DNA double-strand breaks (DSBs)
through coordinated actions of protein sensors, transducers, and effectors. Here we show …

MicroRNAs and their regulatory roles in plants

MW Jones-Rhoades, DP Bartel, B Bartel - Annu. Rev. Plant Biol., 2006 - annualreviews.org
MicroRNAs (miRNAs) are small, endogenous RNAs that regulate gene expression in plants
and animals. In plants, these∼ 21-nucleotide RNAs are processed from stem-loop regions …

Transposable elements and the epigenetic regulation of the genome

RK Slotkin, R Martienssen - Nature reviews genetics, 2007 - nature.com
Overlapping epigenetic mechanisms have evolved in eukaryotic cells to silence the
expression and mobility of transposable elements (TEs). Owing to their ability to recruit the …

Regulation and function of DNA methylation in plants and animals

XJ He, T Chen, JK Zhu - Cell research, 2011 - nature.com
DNA methylation is an important epigenetic mark involved in diverse biological processes.
In plants, DNA methylation can be established through the RNA-directed DNA methylation …

Histone methylation in higher plants

C Liu, F Lu, X Cui, X Cao - Annual review of plant biology, 2010 - annualreviews.org
Histone methylation plays a fundamental role in regulating diverse developmental
processes and is also involved in silencing repetitive sequences in order to maintain …

Small RNAs and their roles in plant development

X Chen - Annual Review of Cell and Developmental, 2009 - annualreviews.org
Small RNAs of 20–30 nucleotides guide regulatory processes at the DNA or RNA level in a
wide range of eukaryotic organisms. Many, although not all, small RNAs are processed from …

Control of chromatin structure by long noncoding RNA

G Böhmdorfer, AT Wierzbicki - Trends in cell biology, 2015 - cell.com
Long noncoding RNA (lncRNA) is a pivotal factor regulating various aspects of genome
activity. Genome regulation via DNA methylation and post-translational histone …