Interaction modules that impart specificity to disordered protein

K Cermakova, HC Hodges - Trends in biochemical sciences, 2023 - cell.com
Intrinsically disordered regions (IDRs) are especially enriched among proteins that regulate
chromatin and transcription. As a result, mechanisms that influence specificity of IDR-driven …

[HTML][HTML] The next wave of interactomics: Mapping the SLiM-based interactions of the intrinsically disordered proteome

NE Davey, L Simonetti, Y Ivarsson - Current opinion in structural biology, 2023 - Elsevier
Short linear motifs (SLiMs) are a unique and ubiquitous class of protein interaction modules
that perform key regulatory functions and drive dynamic complex formation. For decades …

The eukaryotic linear motif resource: 2022 release

M Kumar, S Michael, J Alvarado-Valverde… - Nucleic acids …, 2022 - academic.oup.com
Almost twenty years after its initial release, the Eukaryotic Linear Motif (ELM) resource
remains an invaluable source of information for the study of motif-mediated protein-protein …

ELM—the eukaryotic linear motif resource in 2020

M Kumar, M Gouw, S Michael… - Nucleic acids …, 2020 - academic.oup.com
Studies on the DNA-binding properties of transcription factors are important in searching for
the downstream genes regulated by these factors. In the present study, we report on the …

Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome

C Benz, M Ali, I Krystkowiak, L Simonetti… - Molecular Systems …, 2022 - embopress.org
Specific protein–protein interactions are central to all processes that underlie cell
physiology. Numerous studies have together identified hundreds of thousands of human …

Motif-dependent binding on the intervening domain regulates O-GlcNAc transferase

CM Blankenship, J Xie, C Benz, A Wang… - Nature Chemical …, 2023 - nature.com
The modification of intracellular proteins with O-linked β-N-acetylglucosamine (O-GlcNAc)
moieties is a highly dynamic process that spatiotemporally regulates nearly every important …

Protein serine/threonine phosphatases: keys to unlocking regulators and substrates

DL Brautigan, S Shenolikar - Annual review of biochemistry, 2018 - annualreviews.org
Protein serine/threonine phosphatases (PPPs) are ancient enzymes, with distinct types
conserved across eukaryotic evolution. PPPs are segregated into types primarily on the …

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

T Kruse, C Benz, DH Garvanska, R Lindqvist… - Nature …, 2021 - nature.com
Viral proteins make extensive use of short peptide interaction motifs to hijack cellular host
factors. However, most current large-scale methods do not identify this important class of …

Structural insights into protein regulation by phosphorylation and substrate recognition of protein kinases/phosphatases

SH Seok - Life, 2021 - mdpi.com
Protein phosphorylation is one of the most widely observed and important post-translational
modification (PTM) processes. Protein phosphorylation is regulated by protein kinases, each …

Discovery and pharmacophoric characterization of chemokine network inhibitors using phage-display, saturation mutagenesis and computational modelling

S Vales, J Kryukova, S Chandra… - Nature …, 2023 - nature.com
CC and CXC-chemokines are the primary drivers of chemotaxis in inflammation, but
chemokine network redundancy thwarts pharmacological intervention. Tick evasins …