Historical perspective, development and applications of next-generation sequencing in plant virology

M Barba, H Czosnek, A Hadidi - Viruses, 2014 - mdpi.com
Next-generation high throughput sequencing technologies became available at the onset of
the 21st century. They provide a highly efficient, rapid, and low cost DNA sequencing …

Rice stripe virus: Exploring Molecular Weapons in the Arsenal of a Negative-Sense RNA Virus

Y Xu, S Fu, X Tao, X Zhou - Annual Review of Phytopathology, 2021 - annualreviews.org
Rice stripe disease caused by Rice stripe virus (RSV) is one of the most devastating plant
viruses of rice and causes enormous losses in production. RSV is transmitted from plant to …

Biogenesis, function, and applications of virus-derived small RNAs in plants

C Zhang, Z Wu, Y Li, J Wu - Frontiers in microbiology, 2015 - frontiersin.org
RNA silencing, an evolutionarily conserved and sequence-specific gene-inactivation
system, has a pivotal role in antiviral defense in most eukaryotic organisms. In plants, a class …

Next-generation sequencing and genome editing in plant virology

A Hadidi, R Flores, T Candresse, M Barba - Frontiers in microbiology, 2016 - frontiersin.org
Next-generation sequencing (NGS) has been applied to plant virology since 2009. NGS
provides highly efficient, rapid, low cost DNA, or RNA high-throughput sequencing of the …

Rice stripe virus interferes with S-acylation of remorin and induces its autophagic degradation to facilitate virus infection

S Fu, Y Xu, C Li, Y Li, J Wu, X Zhou - Molecular plant, 2018 - cell.com
Remorins are plant-specific membrane-associated proteins and were proposed to play
crucial roles in plant–pathogen interactions. However, little is known about how pathogens …

Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

Interaction between Rice stripe virus disease-specific protein and host PsbP enhances virus symptoms

L Kong, J Wu, L Lu, Y Xu, X Zhou - Molecular plant, 2014 - cell.com
Rice stripe virus (RSV) causes severe diseases in Oryza sativa (rice) in many Eastern Asian
countries. Disease-specific protein (SP) of RSV is a non-structural protein and its …

Viral delivery of dsRNA for control of insect agricultural pests and vectors of human disease: prospects and challenges

A Kolliopoulou, CNT Taning, G Smagghe… - Frontiers in …, 2017 - frontiersin.org
RNAi is applied as a new and safe method for pest control in agriculture but efficiency and
specificity of delivery of dsRNA trigger remains a critical issue. Various agents have been …

Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves

V Golyaev, T Candresse, F Rabenstein, MM Pooggin - Scientific reports, 2019 - nature.com
In plants, RNA interference (RNAi) generates small interfering (si) RNAs from entire
genomes of viruses, satellites and viroids. Therefore, deep small (s) RNA sequencing is a …

Differential Expression of Tomato Spotted Wilt Virus-Derived Viral Small RNAs in Infected Commercial and Experimental Host Plants

N Mitter, V Koundal, S Williams, H Pappu - PLoS One, 2013 - journals.plos.org
Background Viral small RNAs (vsiRNAs) in the infected host can be generated from viral
double-stranded RNA replicative intermediates, self-complementary regions of the viral …