Principles of genetic circuit design
JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …
expression in response to specific signals. Engineers seek to harness this capability to …
Control theory meets synthetic biology
The past several years have witnessed an increased presence of control theoretic concepts
in synthetic biology. This review presents an organized summary of how these control …
in synthetic biology. This review presents an organized summary of how these control …
Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells
BH Weinberg, NTH Pham, LD Caraballo… - Nature …, 2017 - nature.com
Engineered genetic circuits for mammalian cells often require extensive fine-tuning to
perform as intended. We present a robust, general, scalable system, called'Boolean logic …
perform as intended. We present a robust, general, scalable system, called'Boolean logic …
Biotechnological domestication of pseudomonads using synthetic biology
Much of contemporary synthetic biology research relies on the use of bacterial chassis for
plugging-in and plugging-out genetic circuits and new-to-nature functionalities. However …
plugging-in and plugging-out genetic circuits and new-to-nature functionalities. However …
Resource competition shapes the response of genetic circuits
A common approach to design genetic circuits is to compose gene expression cassettes
together. While appealing, this modular approach is challenged by the fact that expression …
together. While appealing, this modular approach is challenged by the fact that expression …
Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design
Large synthetic genetic circuits require the simultaneous expression of many regulators.
Deactivated Cas9 (dCas9) can serve as a repressor by having a small guide RNA (sgRNA) …
Deactivated Cas9 (dCas9) can serve as a repressor by having a small guide RNA (sgRNA) …
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates
Natural genetic circuits enable cells to make sophisticated digital decisions. Building equally
complex synthetic circuits in eukaryotes remains difficult, however, because commonly used …
complex synthetic circuits in eukaryotes remains difficult, however, because commonly used …
An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells
Synthetic biology has the potential to bring forth advanced genetic devices for applications
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …
A 'resource allocator'for transcription based on a highly fragmented T7 RNA polymerase
Synthetic genetic systems share resources with the host, including machinery for
transcription and translation. Phage RNA polymerases (RNAP s) decouple transcription from …
transcription and translation. Phage RNA polymerases (RNAP s) decouple transcription from …
A load driver device for engineering modularity in biological networks
The behavior of gene modules in complex synthetic circuits is often unpredictable 1, 2, 3, 4.
After joining modules to create a circuit, downstream elements (such as binding sites for a …
After joining modules to create a circuit, downstream elements (such as binding sites for a …