Multimodal learning with graphs

Y Ektefaie, G Dasoulas, A Noori, M Farhat… - Nature Machine …, 2023 - nature.com
Artificial intelligence for graphs has achieved remarkable success in modelling complex
systems, ranging from dynamic networks in biology to interacting particle systems in physics …

Graph neural networks

G Corso, H Stark, S Jegelka, T Jaakkola… - Nature Reviews …, 2024 - nature.com
Graphs are flexible mathematical objects that can represent many entities and knowledge
from different domains, including in the life sciences. Graph neural networks (GNNs) are …

Towards foundation models for knowledge graph reasoning

M Galkin, X Yuan, H Mostafa, J Tang, Z Zhu - arXiv preprint arXiv …, 2023 - arxiv.org
Foundation models in language and vision have the ability to run inference on any textual
and visual inputs thanks to the transferable representations such as a vocabulary of tokens …

Democratizing knowledge representation with BioCypher

S Lobentanzer, P Aloy, J Baumbach, B Bohar… - Nature …, 2023 - nature.com
Biomedical data are amassed at an ever-increasing rate, and machine learning tools that
use prior knowledge in combination with biomedical big data are gaining much traction 1, 2 …

[HTML][HTML] Towards electronic health record-based medical knowledge graph construction, completion, and applications: A literature study

L Murali, G Gopakumar, DM Viswanathan… - Journal of biomedical …, 2023 - Elsevier
With the growth of data and intelligent technologies, the healthcare sector opened numerous
technology that enabled services for patients, clinicians, and researchers. One major hurdle …

Deciphering the impact of genomic variation on function

Code of Conduct Committee (alphabetical by last name … - Nature, 2024 - nature.com
Our genomes influence nearly every aspect of human biology—from molecular and cellular
functions to phenotypes in health and disease. Studying the differences in DNA sequence …

[HTML][HTML] An open source knowledge graph ecosystem for the life sciences

TJ Callahan, IJ Tripodi, AL Stefanski, L Cappelletti… - Scientific Data, 2024 - nature.com
Translational research requires data at multiple scales of biological organization.
Advancements in sequencing and multi-omics technologies have increased the availability …

Graph ai in medicine

R Johnson, MM Li, A Noori, O Queen… - arXiv preprint arXiv …, 2023 - arxiv.org
In clinical artificial intelligence (AI), graph representation learning, mainly through graph
neural networks (GNNs), stands out for its capability to capture intricate relationships within …

[HTML][HTML] Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining

WE Djeddi, K Hermi, S Ben Yahia, G Diallo - BMC bioinformatics, 2023 - Springer
Background The pharmaceutical field faces a significant challenge in validating drug target
interactions (DTIs) due to the time and cost involved, leading to only a fraction being …

Graph Artificial Intelligence in Medicine

R Johnson, MM Li, A Noori, O Queen… - Annual Review of …, 2024 - annualreviews.org
In clinical artificial intelligence (AI), graph representation learning, mainly through graph
neural networks and graph transformer architectures, stands out for its capability to capture …