Feature selection methods for big data bioinformatics: A survey from the search perspective

L Wang, Y Wang, Q Chang - Methods, 2016 - Elsevier
This paper surveys main principles of feature selection and their recent applications in big
data bioinformatics. Instead of the commonly used categorization into filter, wrapper, and …

Predicting novel microRNA: a comprehensive comparison of machine learning approaches

G Stegmayer, LE Di Persia, M Rubiolo… - Briefings in …, 2019 - academic.oup.com
Motivation The importance of microRNAs (miRNAs) is widely recognized in the community
nowadays because these short segments of RNA can play several roles in almost all …

GeneAI 3.0: powerful, novel, generalized hybrid and ensemble deep learning frameworks for miRNA species classification of stationary patterns from nucleotides

J Singh, NN Khanna, RK Rout, N Singh, JR Laird… - Scientific reports, 2024 - nature.com
Due to the intricate relationship between the small non-coding ribonucleic acid (miRNA)
sequences, the classification of miRNA species, namely Human, Gorilla, Rat, and Mouse is …

Deep neural architectures for highly imbalanced data in bioinformatics

LA Bugnon, C Yones, DH Milone… - IEEE Transactions on …, 2019 - ieeexplore.ieee.org
In the postgenome era, many problems in bioinformatics have arisen due to the generation
of large amounts of imbalanced data. In particular, the computational classification of …

[PDF][PDF] MEvA-X: a hybrid multiobjective evolutionary tool using an XGBoost classifier for biomarkers discovery on biomedical datasets

K Panagiotopoulos, A Korfiati, K Theofilatos… - …, 2023 - academic.oup.com
Motivation Biomarker discovery is one of the most frequent pursuits in bioinformatics and is
crucial for precision medicine, disease prognosis, and drug discovery. A common challenge …

Overcoming the main challenges of knowledge discovery through tendency to the intelligent data analysis

S Al-Janabi - 2021 International Conference on Data Analytics …, 2021 - ieeexplore.ieee.org
Intelligent Data Analysis (IDA) approach proves its ability to deal with small and huge data
sets; this ability can be done by generating and developing new methodologies. While; …

Hybrid deep neural network for handling data imbalance in precursor MicroRNA

DK Jain, K Kotecha, S Pandya, SS Reddy, RE… - Frontiers in Public …, 2021 - frontiersin.org
Over the last decade, the field of bioinformatics has been increasing rapidly. Robust
bioinformatics tools are going to play a vital role in future progress. Scientists working in the …

Intuitionistic fuzzy multi-view support vector machines with universum data

C Lou, X Xie - Applied Intelligence, 2024 - Springer
As an energizing direction in machine learning, multi-view learning (MVL) is aimed at
exploiting the information among different views for improving the generalization …

High class-imbalance in pre-miRNA prediction: a novel approach based on deepSOM

G Stegmayer, C Yones, L Kamenetzky… - … /ACM transactions on …, 2016 - ieeexplore.ieee.org
The computational prediction of novel microRNA within a full genome involves identifying
sequences having the highest chance of being a miRNA precursor (pre-miRNA). These …

An early intestinal cancer prediction algorithm based on deep belief network

JJ Wan, BL Chen, YX Kong, XG Ma, YT Yu - Scientific reports, 2019 - nature.com
The incidence of colorectal cancer (colorectal cancer, CRC) in China has increased in
recent years, and its mortality rate has become one of the highest among all cancers. CRC …