[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

H Weigand, AJ Beermann, F Čiampor, FO Costa… - Science of the Total …, 2019 - Elsevier
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …

[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems

J Pawlowski, M Kelly-Quinn, F Altermatt… - Science of the Total …, 2018 - Elsevier
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …

Three hundred ways to assess Europe's surface waters: an almost complete overview of biological methods to implement the Water Framework Directive

S Birk, W Bonne, A Borja, S Brucet, A Courrat… - Ecological …, 2012 - Elsevier
According to the Water Framework Directive (WFD), the status of European surface waters is
assessed using aquatic organism groups. Here we present an overview of 297 assessment …

The European Water Framework Directive at the age of 10: a critical review of the achievements with recommendations for the future

D Hering, A Borja, J Carstensen, L Carvalho… - Science of the total …, 2010 - Elsevier
The European Water Framework Directive (WFD), which was adopted in 2000, changed
water management in all member states of the European Union fundamentally, putting …

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

J Schönfeld, E Alve, E Geslin, F Jorissen… - Marine …, 2012 - Elsevier
The European Community Marine Strategy Framework Directive (MSFD) was established to
provide guidelines for monitoring the quality of marine ecosystems. Monitoring the status of …

Marine management–towards an integrated implementation of the European Marine Strategy Framework and the Water Framework Directives

Á Borja, M Elliott, J Carstensen, AS Heiskanen… - Marine pollution …, 2010 - Elsevier
Through implementing environmental Directives, Europe has moved towards coordinated
and integrated catchment-to-coast management, following the most novel legislation on …

Embracing environmental genomics and machine learning for routine biomonitoring

T Cordier, A Lanzén, L Apothéloz-Perret-Gentil… - Trends in …, 2019 - cell.com
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …

From natural to degraded rivers and back again: a test of restoration ecology theory and practice

CK Feld, S Birk, DC Bradley, D Hering, J Kail… - Advances in ecological …, 2011 - Elsevier
Extensive degradation of ecosystems, combined with the increasing demands placed on the
goods and services they provide, is a major driver of biodiversity loss on a global scale. In …

The importance of setting targets and reference conditions in assessing marine ecosystem quality

Á Borja, DM Dauer, A Grémare - Ecological Indicators, 2012 - Elsevier
Assessing benthic quality status of marine and transitional water habitats requires to set up
both:(i) tools (ie indices) to assess the relative quality of the considered habitat, and (ii) …

Developing Foram-AMBI for biomonitoring in the Mediterranean: Species assignments to ecological categories

F Jorissen, MP Nardelli, A Almogi-Labin… - Marine …, 2018 - Elsevier
Most environmental bio-monitoring methods using the species composition of marine faunas
define the Ecological Quality Status of soft bottom ecosystems based on the relative …