[HTML][HTML] A bird's-eye view of deep learning in bioimage analysis

E Meijering - Computational and structural biotechnology journal, 2020 - Elsevier
Deep learning of artificial neural networks has become the de facto standard approach to
solving data analysis problems in virtually all fields of science and engineering. Also in …

[HTML][HTML] Imaging in focus: an introduction to denoising bioimages in the era of deep learning

RF Laine, G Jacquemet, A Krull - The international journal of biochemistry & …, 2021 - Elsevier
Fluorescence microscopy enables the direct observation of previously hidden dynamic
processes of life, allowing profound insights into mechanisms of health and disease …

Real-time denoising enables high-sensitivity fluorescence time-lapse imaging beyond the shot-noise limit

X Li, Y Li, Y Zhou, J Wu, Z Zhao, J Fan, F Deng… - Nature …, 2023 - nature.com
A fundamental challenge in fluorescence microscopy is the photon shot noise arising from
the inevitable stochasticity of photon detection. Noise increases measurement uncertainty …

A poisson-gaussian denoising dataset with real fluorescence microscopy images

Y Zhang, Y Zhu, E Nichols, Q Wang… - Proceedings of the …, 2019 - openaccess.thecvf.com
Fluorescence microscopy has enabled a dramatic development in modern biology. Due to
its inherently weak signal, fluorescence microscopy is not only much noisier than …

Fast and accurate sCMOS noise correction for fluorescence microscopy

B Mandracchia, X Hua, C Guo, J Son, T Urner… - Nature …, 2020 - nature.com
The rapid development of scientific CMOS (sCMOS) technology has greatly advanced
optical microscopy for biomedical research with superior sensitivity, resolution, field-of-view …

Opportunities and challenges for deep learning in cell dynamics research

B Chai, C Efstathiou, H Yue, VM Draviam - Trends in Cell Biology, 2024 - cell.com
The growth of artificial intelligence (AI) has led to an increase in the adoption of computer
vision and deep learning (DL) techniques for the evaluation of microscopy images and …

Image de-noising with machine learning: A review

RS Thakur, S Chatterjee, RN Yadav, L Gupta - IEEE Access, 2021 - ieeexplore.ieee.org
Images are susceptible to various kinds of noises, which corrupt the pictorial information
stored in the images. Image de-noising has become an integral part of the image processing …

Mu-net: Multi-scale U-net for two-photon microscopy image denoising and restoration

S Lee, M Negishi, H Urakubo, H Kasai, S Ishii - Neural Networks, 2020 - Elsevier
Advances in two two-photon microscopy (2PM) have made three-dimensional (3D) neural
imaging of deep cortical regions possible. However, 2PM often suffers from poor image …

Computational methods for single-cell imaging and omics data integration

ER Watson, A Taherian Fard, JC Mar - Frontiers in molecular …, 2022 - frontiersin.org
Integrating single cell omics and single cell imaging allows for a more effective
characterisation of the underlying mechanisms that drive a phenotype at the tissue level …

A low-cost automated digital microscopy platform for automatic identification of diatoms

J Salido, C Sánchez, J Ruiz-Santaquiteria… - Applied Sciences, 2020 - mdpi.com
Featured Application Development of a fully operative low-cost automated digital
microscope for the detection of diatoms by applying deep learning. Abstract Currently …