Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective

A Erdemir, L Mulugeta, JP Ku, A Drach… - Journal of translational …, 2020 - Springer
The complexities of modern biomedicine are rapidly increasing. Thus, modeling and
simulation have become increasingly important as a strategy to understand and predict the …

Degeneracy in epilepsy: multiple routes to hyperexcitable brain circuits and their repair

TM Stöber, D Batulin, J Triesch, R Narayanan… - Communications …, 2023 - nature.com
Due to its complex and multifaceted nature, developing effective treatments for epilepsy is
still a major challenge. To deal with this complexity we introduce the concept of degeneracy …

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

S Dura-Bernal, BA Suter, P Gleeson, M Cantarelli… - Elife, 2019 - elifesciences.org
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …

Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data

SA Neymotin, DS Daniels, B Caldwell, RA McDougal… - Elife, 2020 - elifesciences.org
Magneto-and electro-encephalography (MEG/EEG) non-invasively record human brain
activity with millisecond resolution providing reliable markers of healthy and disease states …

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow

R Migliore, CA Lupascu, LL Bologna… - PLoS computational …, 2018 - journals.plos.org
Every neuron is part of a network, exerting its function by transforming multiple
spatiotemporal synaptic input patterns into a single spiking output. This function is specified …

Exploring phase–amplitude coupling from primary motor cortex-basal ganglia–thalamus network model

Y Yu, F Han, Q Wang - Neural Networks, 2022 - Elsevier
The purpose of this study is to develop a primary motor cortex (M1)-basal ganglia–thalamus
model capable of reproducing the physiological phenomenon of exaggerated phase …

Credibility, replicability, and reproducibility in simulation for biomedicine and clinical applications in neuroscience

L Mulugeta, A Drach, A Erdemir, CA Hunt… - Frontiers in …, 2018 - frontiersin.org
Modeling and simulation in computational neuroscience is currently a research enterprise to
better understand neural systems. It is not yet directly applicable to the problems of patients …

Degeneracy in the nervous system: from neuronal excitability to neural coding

MA Kamaleddin - BioEssays, 2022 - Wiley Online Library
Degeneracy is ubiquitous across biological systems where structurally different elements
can yield a similar outcome. Degeneracy is of particular interest in neuroscience too. On the …

Optogenetic stimulation of primary motor cortex regulates beta oscillations in the basal ganglia: A Computational study

Y Yu, Y Fan, S Hou, Q Wang - Communications in Nonlinear Science and …, 2023 - Elsevier
The primary motor cortex (M1) contains interconnected and diverse layers that play an
important role in motor execution. In recent years, M1 has emerged as one of the hot targets …

[HTML][HTML] Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics

S Dura-Bernal, SA Neymotin, BA Suter, J Dacre… - Cell reports, 2023 - cell.com
Understanding cortical function requires studying multiple scales: molecular, cellular, circuit,
and behavioral. We develop a multiscale, biophysically detailed model of mouse primary …