Physics-informed machine learning

GE Karniadakis, IG Kevrekidis, L Lu… - Nature Reviews …, 2021 - nature.com
Despite great progress in simulating multiphysics problems using the numerical
discretization of partial differential equations (PDEs), one still cannot seamlessly incorporate …

Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

E (n) equivariant graph neural networks

VG Satorras, E Hoogeboom… - … conference on machine …, 2021 - proceedings.mlr.press
This paper introduces a new model to learn graph neural networks equivariant to rotations,
translations, reflections and permutations called E (n)-Equivariant Graph Neural Networks …

Gemnet: Universal directional graph neural networks for molecules

J Gasteiger, F Becker… - Advances in Neural …, 2021 - proceedings.neurips.cc
Effectively predicting molecular interactions has the potential to accelerate molecular
dynamics by multiple orders of magnitude and thus revolutionize chemical simulations …

Understanding and mitigating gradient flow pathologies in physics-informed neural networks

S Wang, Y Teng, P Perdikaris - SIAM Journal on Scientific Computing, 2021 - SIAM
The widespread use of neural networks across different scientific domains often involves
constraining them to satisfy certain symmetries, conservation laws, or other domain …

Geom-gcn: Geometric graph convolutional networks

H Pei, B Wei, KCC Chang, Y Lei, B Yang - arXiv preprint arXiv:2002.05287, 2020 - arxiv.org
Message-passing neural networks (MPNNs) have been successfully applied to
representation learning on graphs in a variety of real-world applications. However, two …

Distance encoding: Design provably more powerful neural networks for graph representation learning

P Li, Y Wang, H Wang… - Advances in Neural …, 2020 - proceedings.neurips.cc
Learning representations of sets of nodes in a graph is crucial for applications ranging from
node-role discovery to link prediction and molecule classification. Graph Neural Networks …

Analyzing learned molecular representations for property prediction

K Yang, K Swanson, W Jin, C Coley… - Journal of chemical …, 2019 - ACS Publications
Advancements in neural machinery have led to a wide range of algorithmic solutions for
molecular property prediction. Two classes of models in particular have yielded promising …

Identity-aware graph neural networks

J You, JM Gomes-Selman, R Ying… - Proceedings of the AAAI …, 2021 - ojs.aaai.org
Abstract Message passing Graph Neural Networks (GNNs) provide a powerful modeling
framework for relational data. However, the expressive power of existing GNNs is upper …

Improving graph neural network expressivity via subgraph isomorphism counting

G Bouritsas, F Frasca, S Zafeiriou… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
While Graph Neural Networks (GNNs) have achieved remarkable results in a variety of
applications, recent studies exposed important shortcomings in their ability to capture the …