Coronavirus cis-acting RNA elements
Coronaviruses have exceptionally large RNA genomes of approximately 30 kilobases.
Genome replication and transcription is mediated by a multisubunit protein complex …
Genome replication and transcription is mediated by a multisubunit protein complex …
[HTML][HTML] Recent advances in RNA folding
In the realm of nucleic acid structures, secondary structure forms a conceptually important
intermediate level of description and explains the dominating part of the free energy of …
intermediate level of description and explains the dominating part of the free energy of …
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
The IntaRNA algorithm enables fast and accurate prediction of RNA–RNA hybrids by
incorporating seed constraints and interaction site accessibility. Here, we introduce …
incorporating seed constraints and interaction site accessibility. Here, we introduce …
[HTML][HTML] NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
Autosomal-recessive loss of the NSUN2 gene has been identified as a causative link to
intellectual disability disorders in humans. NSun2 is an RNA methyltransferase modifying …
intellectual disability disorders in humans. NSun2 is an RNA methyltransferase modifying …
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
CopraRNA (Comparative prediction algorithm for small RNA targets) is the most recent asset
to the Freiburg RNA Tools webserver. It incorporates and extends the functionality of the …
to the Freiburg RNA Tools webserver. It incorporates and extends the functionality of the …
Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile
Clostridium difficile is an emergent pathogen, and the most common cause of nosocomial
diarrhea. In an effort to understand the role of small noncoding RNAs (sRNAs) in C. difficile …
diarrhea. In an effort to understand the role of small noncoding RNAs (sRNAs) in C. difficile …
Comparative genomics boosts target prediction for bacterial small RNAs
Small RNAs (sRNAs) constitute a large and heterogeneous class of bacterial gene
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target …
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target …
ModeRNA: a tool for comparative modeling of RNA 3D structure
M Rother, K Rother, T Puton… - Nucleic acids research, 2011 - academic.oup.com
RNA is a large group of functionally important biomacromolecules. In striking analogy to
proteins, the function of RNA depends on its structure and dynamics, which in turn is …
proteins, the function of RNA depends on its structure and dynamics, which in turn is …
TGF-β mediates renal fibrosis via the Smad3-Erbb4-IR long noncoding RNA axis
M Feng, PMK Tang, XR Huang, SF Sun, YK You… - Molecular Therapy, 2018 - cell.com
Transforming growth factor β (TGF-β)/Smad3 signaling plays a role in tissue fibrosis. We
report here that Erbb4-IR is a novel long non-coding RNA (lncRNA) responsible for TGF …
report here that Erbb4-IR is a novel long non-coding RNA (lncRNA) responsible for TGF …
The ViennaRNA web services
The ViennaRNA package is a widely used collection of programs for thermodynamic RNA
secondary structure prediction. Over the years, many additional tools have been developed …
secondary structure prediction. Over the years, many additional tools have been developed …