Synthetic biology-inspired strategies and tools for engineering of microbial natural product biosynthetic pathways

K Alam, J Hao, Y Zhang, A Li - Biotechnology Advances, 2021 - Elsevier
Microbial-derived natural products (NPs) and their derivative products are of great
importance and used widely in many fields, especially in pharmaceutical industries …

Bacterial genetic engineering by means of recombineering for reverse genetics

U Fels, K Gevaert, P Van Damme - Frontiers in Microbiology, 2020 - frontiersin.org
Serving a robust platform for reverse genetics enabling the in vivo study of gene functions
primarily in enterobacteriaceae, recombineering-or recombination-mediated genetic …

Construction and modular implementation of the THETA cycle for synthetic CO2 fixation

S Luo, C Diehl, H He, YJ Bae, M Klose, P Claus… - Nature Catalysis, 2023 - nature.com
Synthetic biology offers the opportunity to build solutions for improved capture and
conversion of carbon dioxide (CO2) that outcompete those evolved by nature. Here we …

Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli

T Wu, PA Gómez-Coronado, A Kubis… - Nature …, 2023 - nature.com
Abstract One-carbon (C1) substrates, such as methanol or formate, are attractive feedstocks
for circular bioeconomy. These substrates are typically converted into formaldehyde, serving …

A bacterial gene-drive system efficiently edits and inactivates a high copy number antibiotic resistance locus

JA Valderrama, SS Kulkarni, V Nizet, E Bier - Nature Communications, 2019 - nature.com
Gene-drive systems in diploid organisms bias the inheritance of one allele over another.
CRISPR-based gene-drive expresses a guide RNA (gRNA) into the genome at the site …

RNAi‐mediated silencing of Mediterranean fruit fly (Ceratitis capitata) endogenous genes using orally‐supplied double‐stranded RNAs produced in Escherichia coli

B Ortolá, A Urbaneja, M Eiras… - Pest Management …, 2024 - Wiley Online Library
BACKGROUND The Mediterranean fruit fly (medfly), Ceratitis capitata Wiedemann, is a
major pest affecting fruit and vegetable production worldwide, whose control is mainly based …

Gut microbial β-glucuronidase inhibition via catalytic cycle interception

SJ Pellock, BC Creekmore, WG Walton… - ACS central …, 2018 - ACS Publications
Microbial β-glucuronidases (GUSs) cause severe gut toxicities that limit the efficacy of
cancer drugs and other therapeutics. Selective inhibitors of bacterial GUS have been shown …

Engineered E. coli W enables efficient 2,3-butanediol production from glucose and sugar beet molasses using defined minimal medium as economic basis

AM Erian, M Gibisch, S Pflügl - Microbial Cell Factories, 2018 - Springer
Background Efficient microbial production of chemicals is often hindered by the cytotoxicity
of the products or by the pathogenicity of the host strains. Hence 2, 3-butanediol, an …

RNA polymerase SI3 domain modulates global transcriptional pausing and pause-site fluctuations

Y Bao, X Cao, R Landick - Nucleic acids research, 2024 - academic.oup.com
Transcriptional pausing aids gene regulation by cellular RNA polymerases (RNAPs). A
surface-exposed domain inserted into the catalytic trigger loop (TL) of Escherichia coli …

Loss of N1-methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression

I Masuda, JY Hwang, T Christian, S Maharjan… - Elife, 2021 - elifesciences.org
N 1-methylation of G37 is required for a subset of tRNAs to maintain the translational
reading-frame. While loss of m 1 G37 increases ribosomal+ 1 frameshifting, whether it incurs …