DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits
M Oliva, K Demanelis, Y Lu, M Chernoff, F Jasmine… - Nature …, 2023 - nature.com
Studies of DNA methylation (DNAm) in solid human tissues are relatively scarce; tissue-
specific characterization of DNAm is needed to understand its role in gene regulation and its …
specific characterization of DNAm is needed to understand its role in gene regulation and its …
DNA methylation biomarkers in asthma and rhinitis: are we there yet?
The study of epigenetics has improved our understanding of mechanisms underpinning
gene‐environment interactions and is providing new insights in the pathophysiology of …
gene‐environment interactions and is providing new insights in the pathophysiology of …
Epigenetic regulation of pediatric and neonatal immune responses
J Bermick, M Schaller - Pediatric research, 2022 - nature.com
Epigenetic regulation of transcription is a collective term that refers to mechanisms known to
regulate gene transcription without changing the underlying DNA sequence. These …
regulate gene transcription without changing the underlying DNA sequence. These …
Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems
Background Learning the causal structure helps identify risk factors, disease mechanisms,
and candidate therapeutics for complex diseases. However, although complex biological …
and candidate therapeutics for complex diseases. However, although complex biological …
Detecting the multiomics signatures of factor-specific inflammatory effects on airway smooth muscles
Smooth muscles are a specific muscle subtype that is widely identified in the tissues of
internal passageways. This muscle subtype has the capacity for controlled or regulated …
internal passageways. This muscle subtype has the capacity for controlled or regulated …
Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children's blood
C Ruiz-Arenas, C Hernandez-Ferrer, M Vives-Usano… - Elife, 2022 - elifesciences.org
Background: The identification of expression quantitative trait methylation (eQTMs), defined
as associations between DNA methylation levels and gene expression, might help the …
as associations between DNA methylation levels and gene expression, might help the …
[HTML][HTML] Epigenome-wide association studies of allergic disease and the environment
A Cardenas, RP Fadadu, GH Koppelman - Journal of Allergy and Clinical …, 2023 - Elsevier
The epigenome is at the intersection of the environment, genotype, and cellular response.
DNA methylation of cytosine nucleotides, the most studied epigenetic modification, has been …
DNA methylation of cytosine nucleotides, the most studied epigenetic modification, has been …
Local diversity of drought resistance and resilience in Populus tomentosa correlates with the variation of DNA methylation
J Zhou, L Xiao, R Huang, F Song, L Li… - Plant, Cell & …, 2023 - Wiley Online Library
Little information is known about DNA methylation variation in shaping environment‐specific
drought resistance and resilience for tree adaptation. In this study, we leveraged RNA …
drought resistance and resilience for tree adaptation. In this study, we leveraged RNA …
Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus
Background Genome-wide association studies (GWASs) have identified thousands of
variants associated with asthma and other complex diseases. However, the functional …
variants associated with asthma and other complex diseases. However, the functional …
Tumor expression quantitative trait methylation screening reveals distinct CpG panels for deconvolving cancer immune signatures
DNA methylation signatures in tumors could serve as reliable biomarkers that are accessible
in archival tissues for tracking the epigenetic dynamics shaped by both cancer cells and the …
in archival tissues for tracking the epigenetic dynamics shaped by both cancer cells and the …