Adaptable hydrogel networks with reversible linkages for tissue engineering
H Wang, SC Heilshorn - Advanced Materials, 2015 - Wiley Online Library
Adaptable hydrogels have recently emerged as a promising platform for three‐dimensional
(3D) cell encapsulation and culture. In conventional, covalently crosslinked hydrogels …
(3D) cell encapsulation and culture. In conventional, covalently crosslinked hydrogels …
Protein engineering by combined computational and in vitro evolution approaches
L Rosenfeld, M Heyne, JM Shifman, N Papo - Trends in biochemical …, 2016 - cell.com
Two alternative strategies are commonly used to study protein–protein interactions (PPIs)
and to engineer protein-based inhibitors. In one approach, binders are selected …
and to engineer protein-based inhibitors. In one approach, binders are selected …
The multiple‐specificity landscape of modular peptide recognition domains
D Gfeller, F Butty, M Wierzbicka… - Molecular systems …, 2011 - embopress.org
Modular protein interaction domains form the building blocks of eukaryotic signaling
pathways. Many of them, known as peptide recognition domains, mediate protein …
pathways. Many of them, known as peptide recognition domains, mediate protein …
Data-driven prediction and design of bZIP coiled-coil interactions
V Potapov, JB Kaplan, AE Keating - PLoS computational biology, 2015 - journals.plos.org
Selective dimerization of the basic-region leucine-zipper (bZIP) transcription factors presents
a vivid example of how a high degree of interaction specificity can be achieved within a …
a vivid example of how a high degree of interaction specificity can be achieved within a …
Predicting PDZ domain mediated protein interactions from structure
Background PDZ domains are structural protein domains that recognize simple linear amino
acid motifs, often at protein C-termini, and mediate protein-protein interactions (PPIs) in …
acid motifs, often at protein C-termini, and mediate protein-protein interactions (PPIs) in …
Computational tools and strategies to develop peptide-based inhibitors of protein-protein interactions
M Delaunay, T Ha-Duong - Computational peptide science: methods and …, 2021 - Springer
Protein-protein interactions play crucial and subtle roles in many biological processes and
modifications of their fine mechanisms generally result in severe diseases. Peptide …
modifications of their fine mechanisms generally result in severe diseases. Peptide …
[HTML][HTML] Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains
Peptide-binding domains play a critical role in regulation of cellular processes by mediating
protein interactions involved in signalling. In recent years, the development of large-scale …
protein interactions involved in signalling. In recent years, the development of large-scale …
[HTML][HTML] Domain-mediated protein interaction prediction: From genome to network
Protein–protein interactions (PPIs), involved in many biological processes such as cellular
signaling, are ultimately encoded in the genome. Solving the problem of predicting protein …
signaling, are ultimately encoded in the genome. Solving the problem of predicting protein …
Fast and reliable prediction of domain–peptide binding affinity using coarse-grained structure models
F Tian, R Tan, T Guo, P Zhou, L Yang - Biosystems, 2013 - Elsevier
Domain–peptide recognition and interaction are fundamentally important for eukaryotic
signaling and regulatory networks. It is thus essential to quantitatively infer the binding …
signaling and regulatory networks. It is thus essential to quantitatively infer the binding …
Additive energetic contributions of multiple peptide positions determine the relative promiscuity of viral and human sequences for PDZ domain targets
EF Tahti, JM Blount, SN Jackson, M Gao… - Protein …, 2023 - Wiley Online Library
Protein–protein interactions that involve recognition of short peptides are critical in cellular
processes. Protein–peptide interaction surface areas are relatively small and shallow, and …
processes. Protein–peptide interaction surface areas are relatively small and shallow, and …