Splicing regulation by long noncoding RNAs

N Romero-Barrios, MF Legascue… - Nucleic acids …, 2018 - academic.oup.com
Massive high-throughput sequencing techniques allowed the identification of thousands of
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …

[HTML][HTML] Regulatory network of serine/arginine-rich (SR) proteins: the molecular mechanism and physiological function in plants

X Jin - International Journal of Molecular Sciences, 2022 - mdpi.com
Serine/arginine-rich (SR) proteins are a type of splicing factor. They play significant roles in
constitutive and alternative pre-mRNA splicing, and are involved in post-splicing activities …

[HTML][HTML] A survey of the sorghum transcriptome using single-molecule long reads

SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …

Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible

LF Lareau, SE Brenner - Molecular biology and evolution, 2015 - academic.oup.com
Ultraconserved elements, unusually long regions of perfect sequence identity, are found in
genes encoding numerous RNA-binding proteins including arginine-serine rich (SR) …

Alternative splicing coupled mRNA decay shapes the temperature‐dependent transcriptome

A Neumann, S Meinke, G Goldammer, M Strauch… - EMBO …, 2020 - embopress.org
Mammalian body temperature oscillates with the time of the day and is altered in diverse
pathological conditions. We recently identified a body temperature‐sensitive thermometer …

[HTML][HTML] The SR Splicing Factors: Providing Perspectives on Their Evolution, Expression, Alternative Splicing, and Function in Populus trichocarpa

X Zhao, L Tan, S Wang, Y Shen, L Guo, X Ye… - International Journal of …, 2021 - mdpi.com
Serine/arginine-rich (SR) proteins are important splicing factors in plant development and
abiotic/hormone-related stresses. However, evidence that SR proteins contribute to the …

[HTML][HTML] A comprehensive analysis of alternative splicing in paleopolyploid maize

W Mei, S Liu, JC Schnable, CT Yeh… - Frontiers in plant …, 2017 - frontiersin.org
Identifying and characterizing alternative splicing (AS) enables our understanding of the
biological role of transcript isoform diversity. This study describes the use of publicly …

[HTML][HTML] Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice Vacuolar Na+/H+ Antiporter Gene Compared to 1.9 kb Coding Region with 5 …

USM Amin, S Biswas, SM Elias, S Razzaque… - Frontiers in plant …, 2016 - frontiersin.org
Soil salinity is one of the most challenging problems that restricts the normal growth and
production of rice worldwide. It has therefore become very important to produce more saline …

[HTML][HTML] SCR106 splicing factor modulates abiotic stress responses by maintaining RNA splicing in rice

A Alhabsi, H Butt, GK Kirschner, I Blilou… - Journal of …, 2024 - academic.oup.com
Plants employ sophisticated molecular machinery to fine-tune their responses to growth,
developmental, and stress cues. Gene expression influences plant cellular responses …

Genome-wide analysis of CCHC-type zinc finger (ZCCHC) proteins in yeast, Arabidopsis, and humans

U Aceituno-Valenzuela, R Micol-Ponce… - Cellular and Molecular …, 2020 - Springer
The diverse eukaryotic proteins that contain zinc fingers participate in many aspects of
nucleic acid metabolism, from DNA transcription to RNA degradation, post-transcriptional …