QM/AMOEBA description of properties and dynamics of embedded molecules
We describe the development, implementation, and application of a polarizable QM/MM
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …
Time-resolved infrared absorption spectroscopy applied to photoinduced reactions: how and why
Time-resolved infrared (IR) spectroscopy is a widely used technique in the investigation of
photoinduced reactions, given its capabilities of providing structural information about the …
photoinduced reactions, given its capabilities of providing structural information about the …
Unraveling Water Solvation Effects with Quantum Mechanics/Molecular Mechanics Semiclassical Vibrational Spectroscopy: The Case of Thymidine
We introduce a quantum mechanics/molecular mechanics semiclassical method for studying
the solvation process of molecules in water at the nuclear quantum mechanical level with …
the solvation process of molecules in water at the nuclear quantum mechanical level with …
Fast method for excited-state dynamics in complex systems and its application to the photoactivation of a blue light using flavin photoreceptor
The excited-state dynamics of molecules embedded in complex (bio) matrices is still a
challenging goal for quantum chemical models. Hybrid QM/MM models have proven to be …
challenging goal for quantum chemical models. Hybrid QM/MM models have proven to be …
[HTML][HTML] Deciphering photoreceptors through atomistic modeling from light absorption to conformational response
In this review, we discuss the successes and challenges of the atomistic modeling of
photoreceptors. Throughout our presentation, we integrate explanations of the primary …
photoreceptors. Throughout our presentation, we integrate explanations of the primary …
Vibrational spectroscopy simulation of solvation effects on a G-quadruplex
It is commonly believed that solvation effects on the vibrational properties of a solute are
easily accounted for by simple rules of thumbs, that is, solvating a polar molecule in a polar …
easily accounted for by simple rules of thumbs, that is, solvating a polar molecule in a polar …
Recent progress in atomistic modeling of light-harvesting complexes: A mini review
S Maity, U Kleinekathöfer - Photosynthesis Research, 2023 - Springer
In this mini review, we focus on recent advances in the atomistic modeling of biological light-
harvesting (LH) complexes. Because of their size and sophisticated electronic structures …
harvesting (LH) complexes. Because of their size and sophisticated electronic structures …
Computational infrared and Raman spectra by hybrid QM/MM techniques: a study on molecular and catalytic material systems
J Guan, Y Lu, K Sen, J Abdul Nasir… - … of the Royal …, 2023 - royalsocietypublishing.org
Vibrational spectroscopy is one of the most well-established and important techniques for
characterizing chemical systems. To aid the interpretation of experimental infrared and …
characterizing chemical systems. To aid the interpretation of experimental infrared and …
The OpenMMPol library for polarizable QM/MM calculations of properties and dynamics
We present a new library designed to provide a simple and straightforward way to
implement QM/AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular …
implement QM/AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular …