Allosteric sodium in class A GPCR signaling

V Katritch, G Fenalti, EE Abola, BL Roth… - Trends in biochemical …, 2014 - cell.com
Despite their functional and structural diversity, G-protein-coupled receptors (GPCRs) share
a common mechanism of signal transduction via conformational changes in the seven …

The roles of water in the protein matrix: a largely untapped resource for drug discovery

F Spyrakis, MH Ahmed, AS Bayden… - Journal of medicinal …, 2017 - ACS Publications
The value of thoroughly understanding the thermodynamics specific to a drug
discovery/design study is well known. Over the past decade, the crucial roles of water …

Common activation mechanism of class A GPCRs

Q Zhou, D Yang, M Wu, Y Guo, W Guo, L Zhong, X Cai… - Elife, 2019 - elifesciences.org
Class A G-protein-coupled receptors (GPCRs) influence virtually every aspect of human
physiology. Understanding receptor activation mechanism is critical for discovering novel …

GPCRmd uncovers the dynamics of the 3D-GPCRome

I Rodríguez-Espigares, M Torrens-Fontanals… - Nature …, 2020 - nature.com
G-protein-coupled receptors (GPCRs) are involved in numerous physiological processes
and are the most frequent targets of approved drugs. The explosion in the number of new …

Activation of G-protein-coupled receptors correlates with the formation of a continuous internal water pathway

S Yuan, S Filipek, K Palczewski, H Vogel - Nature communications, 2014 - nature.com
Recent crystal structures of G-protein-coupled receptors (GPCRs) have revealed ordered
internal water molecules, raising questions about the functional role of those waters for …

How μ-opioid receptor recognizes fentanyl

QN Vo, P Mahinthichaichan, J Shen, CR Ellis - Nature communications, 2021 - nature.com
Roughly half of the drug overdose-related deaths in the United States are related to
synthetic opioids represented by fentanyl which is a potent agonist of mu-opioid receptor …

Structural insights into emergent signaling modes of G protein–coupled receptors

I Sutkeviciute, JP Vilardaga - Journal of Biological Chemistry, 2020 - ASBMB
G protein–coupled receptors (GPCRs) represent the largest family of cell membrane
proteins, with> 800 GPCRs in humans alone, and recognize highly diverse ligands, ranging …

Fentanyl and the fluorinated fentanyl derivative NFEPP elicit distinct hydrogen-bond dynamics of the opioid receptor

S Lešnik, U Bren, T Domratcheva… - Journal of chemical …, 2023 - ACS Publications
The development of safe therapeutics to manage pain is of central interest for biomedical
applications. The fluorinated fentanyl derivative N-(3-fluoro-1-phenethylpiperidin-4-yl)-N …

Symmetry, rigidity, and allosteric signaling: from monomeric proteins to molecular machines

D Thirumalai, C Hyeon, PI Zhuravlev… - Chemical …, 2019 - ACS Publications
Allosteric signaling in biological molecules, which may be viewed as specific action at a
distance due to localized perturbation upon binding of ligands or changes in environmental …

New binding sites, new opportunities for GPCR drug discovery

HCS Chan, Y Li, T Dahoun, H Vogel, S Yuan - Trends in biochemical …, 2019 - cell.com
Many central biological events rely on protein–ligand interactions. The identification and
characterization of protein-binding sites for ligands are crucial for the understanding of …