Real‐time genomics for One Health

L Urban, A Perlas, O Francino… - Molecular Systems …, 2023 - embopress.org
The ongoing degradation of natural systems and other environmental changes has put our
society at a crossroad with respect to our future relationship with our planet. While the …

Respiratory metagenomics: route to routine service

JD Edgeworth - Current Opinion in Infectious Diseases, 2023 - journals.lww.com
Pathogen sequencing is a transformational proposition for microbiology laboratories and
their infectious diseases, infection control, and public health partners. Healthcare systems …

Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

PH Serpa, X Deng, M Abdelghany, E Crawford… - Genome medicine, 2022 - Springer
Background Antimicrobial resistance (AMR) is rising at an alarming rate and complicating
the management of infectious diseases including lower respiratory tract infections (LRTI) …

[HTML][HTML] The ongoing Streptococcus pyogenes (Group A Streptococcus) outbreak in London, United Kingdom, in December 2022: a molecular epidemiology study

A Alcolea-Medina, LB Snell, C Alder… - Clinical Microbiology …, 2023 - Elsevier
Objectives Epidemiological and whole-genome sequencing analysis of an ongoing
outbreak of Streptococcus pyogenes (Group A Streptococcus) in London (United Kingdom) …

Drug resistance and vaccine target surveillance of Plasmodium falciparum using nanopore sequencing in Ghana

ST Girgis, E Adika, FE Nenyewodey… - Nature …, 2023 - nature.com
Malaria results in over 600,000 deaths annually, with the highest burden of deaths in young
children living in sub-Saharan Africa. Molecular surveillance can provide important …

Clinical application and evaluation of metagenomic next-generation sequencing in pathogen detection for suspected central nervous system infections

L Yuan, XY Zhu, LM Lai, Q Chen, Y Liu, R Zhao - Scientific Reports, 2024 - nature.com
Abstract Central nervous system Infections (CNSIs) is a disease characterized by complex
pathogens, rapid disease progression, high mortality rate and high disability rate. Here, we …

Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality

A Budhraja, A Basu, A Gheware… - Disease Models & …, 2022 - journals.biologists.com
To elucidate the molecular mechanisms that manifest lung abnormalities during severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections, we performed whole …

Nanopore sequencing technology and its applications

P Zheng, C Zhou, Y Ding, B Liu, L Lu, F Zhu… - MedComm, 2023 - Wiley Online Library
Since the development of Sanger sequencing in 1977, sequencing technology has played a
pivotal role in molecular biology research by enabling the interpretation of biological genetic …

Unified metagenomic method for rapid detection of microorganisms in clinical samples

A Alcolea-Medina, C Alder, LB Snell… - Communications …, 2024 - nature.com
Background Clinical metagenomics involves the genomic sequencing of all microorganisms
in clinical samples ideally after depletion of human DNA to increase sensitivity and reduce …

A dual-process of targeted and unbiased Nanopore sequencing enables accurate and rapid diagnosis of lower respiratory infections

Y Guo, Z Li, L Li, S Li, L Sun, X Yang, Y Dai, J Gu… - …, 2023 - thelancet.com
Background Nanopore metagenomics has been used for infectious disease diagnosis for
bacterial pathogens. However, this technology currently lacks comprehensive performance …