Understanding HIV latency: the road to an HIV cure
MS Dahabieh, E Battivelli, E Verdin - Annual review of medicine, 2015 - annualreviews.org
Treatment with antiretroviral therapy dramatically increases the survival of HIV-infected
individuals. However, treatment has to be continued for life because it does not lead to the …
individuals. However, treatment has to be continued for life because it does not lead to the …
Transcriptional stochasticity as a key aspect of HIV-1 latency
A Damour, V Slaninova, O Radulescu, E Bertrand… - Viruses, 2023 - mdpi.com
This review summarizes current advances in the role of transcriptional stochasticity in HIV-1
latency, which were possible in a large part due to the development of single-cell …
latency, which were possible in a large part due to the development of single-cell …
CRISPR-mediated activation of latent HIV-1 expression
Complete eradication of HIV-1 infection is impeded by the existence of cells that harbor
chromosomally integrated but transcriptionally inactive provirus. These cells can persist for …
chromosomally integrated but transcriptionally inactive provirus. These cells can persist for …
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci
SS Dey, JE Foley, P Limsirichai… - Molecular systems …, 2015 - embopress.org
While gene expression noise has been shown to drive dramatic phenotypic variations, the
molecular basis for this variability in mammalian systems is not well understood. Gene …
molecular basis for this variability in mammalian systems is not well understood. Gene …
Retroviral integration: site matters: mechanisms and consequences of retroviral integration site selection
J Demeulemeester, J De Rijck, R Gijsbers… - …, 2015 - Wiley Online Library
Here, we review genomic target site selection during retroviral integration as a multistep
process in which specific biases are introduced at each level. The first asymmetries are …
process in which specific biases are introduced at each level. The first asymmetries are …
NF-κB-chromatin interactions drive diverse phenotypes by modulating transcriptional noise
VC Wong, VL Bass, ME Bullock, AK Chavali, REC Lee… - Cell reports, 2018 - cell.com
Noisy gene expression generates diverse phenotypes, but little is known about mechanisms
that modulate noise. Combining experiments and modeling, we studied how tumor necrosis …
that modulate noise. Combining experiments and modeling, we studied how tumor necrosis …
Activation of HIV-1 proviruses increases downstream chromatin accessibility
It is unclear how the activation of HIV-1 transcription affects chromatin structure. We
interrogated chromatin organization both genome-wide and nearby HIV-1 integration sites …
interrogated chromatin organization both genome-wide and nearby HIV-1 integration sites …
A transcriptional cycling model recapitulates chromatin-dependent features of noisy inducible transcription
ME Bullock, N Moreno-Martinez… - PLoS Computational …, 2022 - journals.plos.org
Activation of gene expression in response to environmental cues results in substantial
phenotypic heterogeneity between cells that can impact a wide range of outcomes including …
phenotypic heterogeneity between cells that can impact a wide range of outcomes including …
Chemokine CXCL8 Promotes HIV-1 Replication in Human Monocyte-Derived Macrophages and Primary Microglia via Nuclear Factor-κB Pathway
MK Mamik, A Ghorpade - PloS one, 2014 - journals.plos.org
Background Chemokine CXCL8 is an important neutrophil chemoattractant implicated in
various neurodegenerative disorders. Cytokine/chemokine imbalance, with an increase in …
various neurodegenerative disorders. Cytokine/chemokine imbalance, with an increase in …
Fold-change detection of NF-κB at target genes with different transcript outputs
The transcription factor nuclear factor (NF)-κB promotes inflammatory and stress-responsive
gene transcription across a range of cell types in response to the cytokine tumor necrosis …
gene transcription across a range of cell types in response to the cytokine tumor necrosis …