Much of the complexity within cells arises from functional and regulatory interactions among
proteins. The core of these interactions is increasingly known, but novel interactions …

Gene and protein set enrichment analysis is a critical step in the analysis of data collected
from omics experiments. Enrichr is a popular gene set enrichment analysis web-server …

Single-cell RNA sequencing (scRNA-seq) is a revolutionary tool for studying the physiology
of normal and pathologically altered tissues. This approach provides information about …

With the emergence of next‐generation nucleotide sequencing and mass spectrometry‐
based proteomics and metabolomics tools, we have comprehensive and scalable methods …

Advancements in genomic and proteomic technologies have powered the creation of large
gene and protein networks (“interactomes”) for understanding biological systems. However …

Proteins cooperate, regulate and bind each other to achieve their functions. Understanding
the complex network of their interactions is essential for a systems-level description of …

Motivation Understanding biological processes relies heavily on curated knowledge of
physical interactions between proteins. Yet, a notable gap remains between the information …

Abstract FunCoup 6 (https://funcoup. org) represents a significant advancement in global
functional association networks, aiming to provide researchers with a comprehensive view …

Predicting disease-related microRNAs (miRNAs) and long noncoding RNAs (lncRNAs) is
crucial to find new biomarkers for the prevention, diagnosis, and treatment of complex …

Pre-trained large language models (LLMs) have attracted increasing attention in biomedical
domains due to their success in natural language processing. However, the complex traits …