Recent advances in mass spectrometry based clinical proteomics: applications to cancer research
A Macklin, S Khan, T Kislinger - Clinical proteomics, 2020 - Springer
Cancer biomarkers have transformed current practices in the oncology clinic. Continued
discovery and validation are crucial for improving early diagnosis, risk stratification, and …
discovery and validation are crucial for improving early diagnosis, risk stratification, and …
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
To provide a detailed analysis of the molecular components and underlying mechanisms
associated with ovarian cancer, we performed a comprehensive mass-spectrometry-based …
associated with ovarian cancer, we performed a comprehensive mass-spectrometry-based …
Proteogenomic characterization of human colon and rectal cancer
Extensive genomic characterization of human cancers presents the problem of inference
from genomic abnormalities to cancer phenotypes. To address this problem, we analysed …
from genomic abnormalities to cancer phenotypes. To address this problem, we analysed …
[HTML][HTML] A tissue-specific atlas of mouse protein phosphorylation and expression
EL Huttlin, MP Jedrychowski, JE Elias, T Goswami… - Cell, 2010 - cell.com
Although most tissues in an organism are genetically identical, the biochemistry of each is
optimized to fulfill its unique physiological roles, with important consequences for human …
optimized to fulfill its unique physiological roles, with important consequences for human …
[HTML][HTML] The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon
DR Donohoe, N Garge, X Zhang, W Sun, TM O'Connell… - Cell metabolism, 2011 - cell.com
The microbiome is being characterized by large-scale sequencing efforts, yet it is not known
whether it regulates host metabolism in a general versus tissue-specific manner or which …
whether it regulates host metabolism in a general versus tissue-specific manner or which …
Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses
Quantitative mass spectrometry methods offer near-comprehensive proteome coverage;
however, these methods still suffer with regards to sample throughput. Multiplex quantitation …
however, these methods still suffer with regards to sample throughput. Multiplex quantitation …
The proteogenomic landscape of curable prostate cancer
DNA sequencing has identified recurrent mutations that drive the aggressiveness of prostate
cancers. Surprisingly, the influence of genomic, epigenomic, and transcriptomic …
cancers. Surprisingly, the influence of genomic, epigenomic, and transcriptomic …
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics
A Geladaki, N Kočevar Britovšek, LM Breckels… - Nature …, 2019 - nature.com
The study of protein localisation has greatly benefited from high-throughput methods
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
[HTML][HTML] A mitochondrial protein compendium elucidates complex I disease biology
Mitochondria are complex organelles whose dysfunction underlies a broad spectrum of
human diseases. Identifying all of the proteins resident in this organelle and understanding …
human diseases. Identifying all of the proteins resident in this organelle and understanding …