Aquaculture omics: An update on the current status of research and data analysis

JK Sundaray, S Dixit, A Rather, KD Rasal, L Sahoo - Marine Genomics, 2022 - Elsevier
Aquaculture is the fast-growing agricultural sector and has the ability to meet the growing
demand for protein nutritional security for future population. In future aquaculture is going to …

The development and characterization of a 57 K single nucleotide polymorphism array for rainbow trout

Y Palti, G Gao, S Liu, MP Kent, S Lien… - Molecular ecology …, 2015 - Wiley Online Library
In this study, we describe the development and characterization of the first high‐density
single nucleotide polymorphism (SNP) genotyping array for rainbow trout. The SNP array is …

RNA-Seq analysis of salinity stress–responsive transcriptome in the liver of spotted sea bass (Lateolabrax maculatus)

X Zhang, H Wen, H Wang, Y Ren, J Zhao, Y Li - PLoS One, 2017 - journals.plos.org
Salinity is one of the most prominent abiotic factors, which greatly influence reproduction,
development, growth, physiological and metabolic activities of fishes. Spotted sea bass …

The molecular stress response

E Faught, N Aluru, MM Vijayan - Fish physiology, 2016 - Elsevier
1. Introduction 2. Molecular Regulation of the Hypothalamic–Pituitary–Interrenal (HPI) Axis
2.1. Hypothalamus 2.2. Pituitary 2.3. Head Kidney (Interrenal Tissue) 3. Genomic Cortisol …

Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation

J Lv, P Liu, Y Wang, B Gao, P Chen, J Li - PLoS One, 2013 - journals.plos.org
Background The swimming crab, Portunus trituberculatus, which is naturally distributed in
the coastal waters of Asia-Pacific countries, is an important farmed species in China. Salinity …

Transcriptomic response to heat stress among ecologically divergent populations of redband trout

SR Narum, NR Campbell - BMC genomics, 2015 - Springer
Background As ectothermic organisms have evolved to differing aquatic climates, the
molecular basis of thermal adaptation is a key area of research. In this study, we tested for …

Basal polarization of the mucosal compartment in Flavobacterium columnare susceptible and resistant channel catfish (Ictalurus punctatus)

E Peatman, C Li, BC Peterson, DL Straus… - Molecular …, 2013 - Elsevier
The freshwater bacterial pathogen, Flavobacterium columnare, infects a variety of
ornamental and farmed fish species worldwide through mucosal attachment points on the …

Status and future perspectives of single nucleotide polymorphisms (SNPs) markers in farmed fishes: Way ahead using next generation sequencing

KD Rasal, V Chakrapani, AK Pandey, AR Rasal… - Gene Reports, 2017 - Elsevier
The progress in the sequencing technology has significantly augmented single nucleotide
polymorphism (SNPs) discovery and genotyping in fish genetic research. The affordable …

Transcriptome profiling of the low-salinity stress responses in the gills of the juvenile Pseudopleuronectes yokohamae

Q Cui, L Qiu, X Yang, S Shang, B Yang, M Chen… - … and Physiology Part D …, 2019 - Elsevier
Salinity is an important environmental factor that affects the life cycle of fish, including their
growth, development and reproduction. The marbled flounder, Pseudopleuronectes …

Transcriptome Analysis of the Portunus trituberculatus: De Novo Assembly, Growth-Related Gene Identification and Marker Discovery

J Lv, P Liu, B Gao, Y Wang, Z Wang, P Chen, J Li - PLoS one, 2014 - journals.plos.org
Background The swimming crab, Portunus trituberculatus, is an important farmed species in
China, has been attracting extensive studies, which require more and more genome …