Relative and absolute quantitation in mass spectrometry–based proteomics

JA Ankney, A Muneer, X Chen - Annual review of analytical …, 2018 - annualreviews.org
Mass spectrometry–based quantitative proteomics is a powerful tool for gaining insights into
function and dynamics of biological systems. However, peptides with different sequences …

Cyclin K goes with Cdk12 and Cdk13

J Kohoutek, D Blazek - Cell division, 2012 - Springer
The cyclin-dependent kinases (Cdks) regulate many cellular processes, including the cell
cycle, neuronal development, transcription, and posttranscriptional processing. To perform …

A timeline of stable isotopes and mass spectrometry in the life sciences

WD Lehmann - Mass spectrometry reviews, 2017 - Wiley Online Library
This review retraces the role of stable isotopes and mass spectrometry in the life sciences.
The timeline is divided into four segments covering the years 1920–1950, 1950–1980, 1980 …

The emerging picture of CDK9/P-TEFb: more than 20 years of advances since PITALRE

NF dos Santos Paparidis, MC Durvale… - Molecular …, 2017 - pubs.rsc.org
CDK9 is a prominent member of the transcriptional CDKs subfamily, a group of kinases
whose function is to control the primary steps of mRNA synthesis and processing by …

Trypsin Immobilization on Hairy Polymer Chains Hybrid Magnetic Nanoparticles for Ultra Fast, Highly Efficient Proteome Digestion, Facile 18O Labeling and Absolute …

W Qin, Z Song, C Fan, W Zhang, Y Cai… - Analytical …, 2012 - ACS Publications
In recent years, quantitative proteomic research attracts great attention because of the
urgent needs in biological and clinical research, such as biomarker discovery and …

A rapid immobilized trypsin digestion combined with liquid chromatography–Tandem mass spectrometry for the detection of milk allergens in baked food

K Qi, T Liu, Y Yang, J Zhang, J Yin, X Ding, W Qin… - Food Control, 2019 - Elsevier
Cow's milk allergy is the most common food allergy, and caseins are the major allergens in
milk. A quantitative proteomics method based on liquid chromatography coupled to mass …

Proteomic analysis of the microenvironment of developing oocytes

J Twigt, RP Steegers‐Theunissen, K Bezstarosti… - …, 2012 - Wiley Online Library
We utilized a setup based on extensive pre‐fractionation of proteolytic peptides and
nanoflow reversed‐phase LC‐MS/MS to identify the (sub) proteome of human follicular fluid …

P‐TEFb goes viral

J Zaborowska, NF Isa, S Murphy - Bioessays, 2016 - Wiley Online Library
Positive transcription elongation factor b (P‐TEFb), which comprises cyclin‐dependent
kinase 9 (CDK9) kinase and cyclin T subunits, is an essential kinase complex in human …

Resolving protein interactions and complexes by affinity purification followed by label‐based quantitative mass spectrometry

L Trinkle‐Mulcahy - Proteomics, 2012 - Wiley Online Library
Label‐based quantitative mass spectrometry analysis of affinity purified complexes, with its
built‐in negative controls and relative ease of use, is an increasingly popular choice for …

Systematic determination of human cyclin dependent kinase (CDK)-9 interactome identifies novel functions in RNA splicing mediated by the DEAD box (DDX)-5/17 …

J Yang, Y Zhao, M Kalita, X Li, M Jamaluddin… - Molecular & Cellular …, 2015 - ASBMB
Inducible transcriptional elongation is a rapid, stereotypic mechanism for activating
immediate early immune defense genes by the epithelium in response to viral pathogens …