The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Bioremediation through microbes: systems biology and metabolic engineering approach
Today, environmental pollution is a serious problem, and bioremediation can play an
important role in cleaning contaminated sites. Remediation strategies, such as chemical and …
important role in cleaning contaminated sites. Remediation strategies, such as chemical and …
Gene family innovation, conservation and loss on the animal stem lineage
Choanoflagellates, the closest living relatives of animals, can provide unique insights into
the changes in gene content that preceded the origin of animals. However, only two …
the changes in gene content that preceded the origin of animals. However, only two …
Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants
The aim of this work was to elucidate the microbial ecology in twelve mesophilic and
thermophilic full-scale biogas plants using a genome-centric metagenomic approach. In this …
thermophilic full-scale biogas plants using a genome-centric metagenomic approach. In this …
An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil
M Hayatsu, K Tago, I Uchiyama, A Toyoda… - The ISME …, 2017 - academic.oup.com
Nitrification, the microbial oxidation of ammonia to nitrate via nitrite, occurs in a wide range
of acidic soils. However, the ammonia-oxidizing bacteria (AOB) that have been isolated from …
of acidic soils. However, the ammonia-oxidizing bacteria (AOB) that have been isolated from …
Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus …
Bacterial symbionts are integral to the health and homeostasis of invertebrate hosts.
Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the …
Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the …
Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes
M Kogawa, M Hosokawa, Y Nishikawa, K Mori… - Scientific reports, 2018 - nature.com
Single-cell genomics is a straightforward approach to obtain genomes from uncultured
microbes. However, sequence reads from a single-cell amplified genome (SAG) contain …
microbes. However, sequence reads from a single-cell amplified genome (SAG) contain …
Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars
Abstract Water from The Cedars springs that discharge from serpentinized ultramafic rocks
feature highly basic (pH=~ 12), highly reducing (E h<− 550 mV) conditions with low ionic …
feature highly basic (pH=~ 12), highly reducing (E h<− 550 mV) conditions with low ionic …
Insights into early animal evolution form the genome of the xenacoelomorph worm Xenoturbella bocki
PH Schiffer, P Natsidis, DJ Leite, HE Robertson… - Elife, 2024 - elifesciences.org
The evolutionary origins of Bilateria remain enigmatic. One of the more enduring proposals
highlights similarities between a cnidarian-like planula larva and simple acoel-like …
highlights similarities between a cnidarian-like planula larva and simple acoel-like …
Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species
The pink-pigmented facultative methylotrophs (PPFMs), a major bacterial group found in the
plant phyllosphere, comprise two genera: Methylobacterium and Methylorubrum. They have …
plant phyllosphere, comprise two genera: Methylobacterium and Methylorubrum. They have …