The small peptide world in long noncoding RNAs
SW Choi, HW Kim, JW Nam - Briefings in bioinformatics, 2019 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a group of transcripts that are longer than 200
nucleotides (nt) without coding potential. Over the past decade, tens of thousands of novel …
nucleotides (nt) without coding potential. Over the past decade, tens of thousands of novel …
Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs
Long noncoding RNAs (lncRNAs) are a large and diverse class of genes in eukaryotic
genomes that contribute to a variety of regulatory processes. Functionally characterized …
genomes that contribute to a variety of regulatory processes. Functionally characterized …
CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
YJ Kang, DC Yang, L Kong, M Hou… - Nucleic acids …, 2017 - academic.oup.com
With advances in next-generation sequencing technologies, numerous novel transcripts in a
large number of organisms have been identified. With the goal of fast, accurate assessment …
large number of organisms have been identified. With the goal of fast, accurate assessment …
LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations
LncBook, a comprehensive resource of human long non-coding RNAs (lncRNAs), has been
used in a wide range of lncRNA studies across various biological contexts. Here, we present …
used in a wide range of lncRNA studies across various biological contexts. Here, we present …
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
LncBook: a curated knowledgebase of human long non-coding RNAs
Long non-coding RNAs (lncRNAs) have significant functions in a wide range of important
biological processes. Although the number of known human lncRNAs has dramatically …
biological processes. Although the number of known human lncRNAs has dramatically …
A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder
RNAs play essential roles in diverse physiological and pathological processes by interacting
with other molecules (RNA/protein/compound), and various computational methods are …
with other molecules (RNA/protein/compound), and various computational methods are …
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Whole transcriptome sequencing (RNA-seq) has become a standard for cataloguing and
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
Multiomics analyses reveal DARS1-AS1/YBX1–controlled posttranscriptional circuits promoting glioblastoma tumorigenesis/radioresistance
The glioblastoma (GBM) stem cell–like cells (GSCs) are critical for tumorigenesis/therapeutic
resistance of GBM. Mounting evidence supports tumor-promoting function of long noncoding …
resistance of GBM. Mounting evidence supports tumor-promoting function of long noncoding …
PLncDB V2. 0: a comprehensive encyclopedia of plant long noncoding RNAs
J Jin, P Lu, Y Xu, Z Li, S Yu, J Liu, H Wang… - Nucleic Acids …, 2021 - academic.oup.com
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides with little or no
protein coding potential. The expanding list of lncRNAs and accumulating evidence of their …
protein coding potential. The expanding list of lncRNAs and accumulating evidence of their …