Computational tools and resources for CRISPR/Cas genome editing

C Li, W Chu, RA Gill, S Sang, Y Shi, X Hu… - Genomics …, 2023 - academic.oup.com
The past decade has witnessed a rapid evolution in identifying more versatile clustered
regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) …

[HTML][HTML] Implementing CRISPR-Cas technologies in conventional and non-conventional yeasts: Current state and future prospects

H Raschmanová, A Weninger, A Glieder, K Kovar… - Biotechnology …, 2018 - Elsevier
Within five years, the CRISPR-Cas system has emerged as the dominating tool for genome
engineering, while also changing the speed and efficiency of metabolic engineering in …

CRISPResso2 provides accurate and rapid genome editing sequence analysis

K Clement, H Rees, MC Canver, JM Gehrke… - Nature …, 2019 - nature.com
To the Editor—The field of genome editing is advancing rapidly1, most recently exemplified
by the advent of base editors that enable changing single nucleotides in a predictable …

Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis

S Avagyan, JE Henninger, WP Mannherz, M Mistry… - Science, 2021 - science.org
Clonal hematopoiesis results from enhanced fitness of a mutant hematopoietic stem and
progenitor cell (HSPC), but how such clones expand is unclear. We developed a technique …

Treatment of a metabolic liver disease by in vivo genome base editing in adult mice

L Villiger, HM Grisch-Chan, H Lindsay, F Ringnalda… - Nature medicine, 2018 - nature.com
CRISPR–Cas-based genome editing holds great promise for targeting genetic disorders,
including inborn errors of hepatocyte metabolism. Precise correction of disease-causing …

Target-specific precision of CRISPR-mediated genome editing

AM Chakrabarti, T Henser-Brownhill, J Monserrat… - Molecular cell, 2019 - cell.com
The CRISPR-Cas9 system has successfully been adapted to edit the genome of various
organisms. However, our ability to predict the editing outcome at specific sites is limited …

Hi-TOM: a platform for high-throughput tracking of mutations induced by CRISPR/Cas systems

Q Liu, C Wang, X Jiao, H Zhang, L Song, Y Li… - Science China Life …, 2019 - Springer
The CRISPR/Cas system has been extensively applied to make precise genetic
modifications in various organisms. Despite its importance and widespread use, large-scale …

Somatic gene editing ameliorates skeletal and cardiac muscle failure in pig and human models of Duchenne muscular dystrophy

A Moretti, L Fonteyne, F Giesert, P Hoppmann… - Nature medicine, 2020 - nature.com
Frameshift mutations in the DMD gene, encoding dystrophin, cause Duchenne muscular
dystrophy (DMD), leading to terminal muscle and heart failure in patients. Somatic gene …

In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA

L Villiger, T Rothgangl, D Witzigmann, R Oka… - Nature biomedical …, 2021 - nature.com
Base editors are RNA-programmable deaminases that enable precise single-base
conversions in genomic DNA. However, off-target activity is a concern in the potential use of …

Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair

N Savic, FCAS Ringnalda, H Lindsay, C Berk… - elife, 2018 - elifesciences.org
The CRISPR-Cas9 targeted nuclease technology allows the insertion of genetic
modifications with single base-pair precision. The preference of mammalian cells to repair …