Neutrophil nucleus: shaping the past and the future

J Salafranca, JK Ko, AK Mukherjee… - Journal of Leukocyte …, 2023 - academic.oup.com
Neutrophils are innate immune cells that are key to protecting the host against infection and
maintaining body homeostasis. However, if dysregulated, they can contribute to disease …

Single-chromosome dynamics reveals locus-dependent dynamics and chromosome territory orientation

YC Chung, M Bisht, J Thuma… - Journal of Cell …, 2023 - journals.biologists.com
Dynamic chromatin organization instantly influences DNA accessibility through modulating
local macromolecular density and interactions, driving changes in transcription activities …

Four-Dimensional Mesoscale Liquid Model of Nucleus Resolves Chromatin's Radial Organization

R Laghmach, M Di Pierro, DA Potoyan - PRX life, 2024 - APS
Recent advances chromatin capture, imaging techniques, and polymer modeling have
dramatically enhanced quantitative understanding of chromosomal folding. However, the …

Interphase chromosomes in replicative senescence: chromosome positioning as a senescence biomarker and the lack of nuclear motor-driven chromosome …

IS Mehta, K Riyahi, RT Pereira, KJ Meaburn… - Frontiers in Cell and …, 2021 - frontiersin.org
This study demonstrates, and confirms, that chromosome territory positioning is altered in
primary senescent human dermal fibroblasts (HDFs). The chromosome territory positioning …

A Multigraph-Based Representation of Hi-C Data

D Makai, A Cseh, A Sepsi, S Makai - Genes, 2022 - mdpi.com
Chromatin–chromatin interactions and three-dimensional (3D) spatial structures are
involved in transcriptional regulation and have a decisive role in DNA replication and repair …

4D Mesoscale liquid model of nucleus resolves chromatin's radial organization

R Laghmach, M Di Pierro, DA Potoyan - bioRxiv, 2023 - biorxiv.org
Recent chromatin capture, imaging techniques, and polymer modeling advancements have
dramatically enhanced our quantitative understanding of chromosomal folding. However …

Loops, TADs, Compartments, and Territories are Elastic and Robust to Dramatic Nuclear Volume Swelling

JT Sanders, R Golloshi, PH Terry, DG Nash, Y Xu… - bioRxiv, 2021 - biorxiv.org
Layers of genome organization are becoming increasingly better characterized, but less is
known about how these structures respond to perturbation or shape changes. Low-salt …

Senescence and the Genome

JM Bridger, HA Foster - Human Interphase Chromosomes: Biomedical …, 2020 - Springer
Cellular senescence is commonly initiated in response to replicative or cell stress pathways.
Senescent cells remain in a state of permanent cell cycle arrest, and although being …

A Multigraph model of the 3D genome

D Makai, A Cseh, A Sepsi, S Makai - bioRxiv, 2021 - biorxiv.org
Spatial organisation of the genome has a fundamental effect on its biological functions.
Chromatin-chromatin interactions and 3D spatial structures are involved in transcriptional …

[引用][C] Pushing the envelope–How the genome interacts with the nuclear envelope in health and disease

RT Pereira, C Samarakone, JM Bridger, IJ de Castro - 2024 - Elsevier