A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

[HTML][HTML] Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length

A Atzeni, L Peter, E Robinson, E Blackburn… - Medical Image …, 2022 - Elsevier
Manual segmentation of stacks of 2D biomedical images (eg, histology) is a time-consuming
task which can be sped up with semi-automated techniques. In this article, we present a …

A multimodal computational pipeline for 3D histology of the human brain

M Mancini, A Casamitjana, L Peter, E Robinson… - Scientific reports, 2020 - nature.com
Ex vivo imaging enables analysis of the human brain at a level of detail that is not possible
in vivo with MRI. In particular, histology can be used to study brain tissue at the microscopic …

Tensor image registration library: automated non-linear registration of sparsely sampled histological specimens to post-mortem MRI of the whole human brain

IN Huszar, M Pallebage-Gamarallage, S Foxley… - BioRxiv, 2019 - biorxiv.org
There is a need to understand the histopathological basis of MRI signal characteristics in
complex biological matter. Microstructural imaging holds promise for sensitive and specific …

3D reconstruction and segmentation of dissection photographs for MRI-free neuropathology

HFJ Tregidgo, A Casamitjana, CS Latimer… - … Image Computing and …, 2020 - Springer
Neuroimaging to neuropathology correlation (NTNC) promis-es to enable the transfer of
microscopic signatures of pathology to in vivo imaging with MRI, ultimately enhancing …

Three‐dimensional histology reveals dissociable human hippocampal long‐axis gradients of Alzheimer's pathology

D Ortega‐Cruz, KS Bress, H Gazula… - Alzheimer's & …, 2024 - Wiley Online Library
Abstract INTRODUCTION Three‐dimensional (3D) histology analyses are essential to
overcome sampling variability and understand pathological differences beyond the …

3d mapping of neurofibrillary tangle burden in the human medial temporal lobe

PA Yushkevich, MM López, MMI de Onzoño Martin… - BioRxiv, 2021 - biorxiv.org
Tau protein neurofibrillary tangles (NFT) are closely linked to neuronal/synaptic loss and
cognitive decline in Alzheimer's disease (AD) and related dementias. Our knowledge of the …

Registration of ultrasound and computed tomography for guidance of laparoscopic liver surgery

J Ramalhinho - 2020 - discovery.ucl.ac.uk
Laparoscopic Ultrasound (LUS) imaging is a standard tool used for image-guidance during
laparoscopic liver resection, as it provides real-time information on the internal structure of …